Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi172g00093 ATGTGTGAAGAAGCTCTGAGGAAGAAACAGTACCAAGTGTTAGAGGAAGTGGGGCGTGGAAGATTCGGCACTGTGTTCCGTTGCTTCCACCCAATTTCAAACCAATTCTATGCTTGCAAAGTCATCGATAAGACCCTCCTCACCGATTCCATTGATCGTCAATGCCTAGAAAATGAGTCCAAATTCATCACCTATCTCTCTCCACATCCCAATATTCTTCAAACCTTCGACGCCTTTGAAGACGCAGATTTCTCAACAATCGTCTTCGATCTCTGTGACCCTCTCACCCTCTTTGACCGCATCGCCGATCGTCCCTTGCCGGAGCCACACGCCGCTTCCATCATGAAGCAGCTTCTAGAAGCTCTTGCACATTGCCACAGGCTTGGAATAGCGCACAGAGACATAAAGCCTGATAACCTGTTGTTTGATTCGAGGGATAACCTTAAAGTCGCCGACTTTGGTTCGGCGGAGTGGTTTGGCGACGGAAGGAGCATGAGTGGGGTGGTGGGTACGCCGTATTACGTGGCGCCGGAGGTTTTGATGGGGAGAGAGTACAATGAGAAAGTGGATGTTTGGAGTAGTGGTGTGATTCTTTACACAATGTTGGCTGGGATTCCACCTTTTTATGGAGACTCTGCTGCAGAGATTTTTGAGGCTGTGGTGAGGGCTAATCTCAGGTTTCCAACGAGGATTTTCAGGTCTGTGTCTTCCTCTGCTAAGGATCTCATTAGGAAGATGATTTGTAGGGATCCCTCTAGGAGAATATCAGCAGAGCAAGCCTTGAGACACCCATGGATATTGAGTGGTGGTGTGACTAGTGATCTAACTTGA 831 0.4826 MCEEALRKKQYQVLEEVGRGRFGTVFRCFHPISNQFYACKVIDKTLLTDSIDRQCLENESKFITYLSPHPNILQTFDAFEDADFSTIVFDLCDPLTLFDRIADRPLPEPHAASIMKQLLEALAHCHRLGIAHRDIKPDNLLFDSRDNLKVADFGSAEWFGDGRSMSGVVGTPYYVAPEVLMGREYNEKVDVWSSGVILYTMLAGIPPFYGDSAAEIFEAVVRANLRFPTRIFRSVSSSAKDLIRKMICRDPSRRISAEQALRHPWILSGGVTSDLT 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi172g00093 276 Gene3D Transferase(Phosphotransferase) domain 1 96 273 - -
Sebi172g00093 276 SUPERFAMILY Protein kinase-like (PK-like) 7 268 IPR011009 -
Sebi172g00093 276 SMART serkin_6 11 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi172g00093 276 ProSiteProfiles Protein kinase domain profile. 11 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi172g00093 276 PANTHER SERINE/THREONINE-PROTEIN KINASE 6 268 - -
Sebi172g00093 276 Gene3D Phosphorylase Kinase; domain 1 1 92 - -
Sebi172g00093 276 FunFam Phosphoenolpyruvate carboxylase kinase 2 3 276 - -
Sebi172g00093 276 ProSitePatterns Protein kinases ATP-binding region signature. 17 40 IPR017441 GO:0005524
Sebi172g00093 276 Pfam Protein kinase domain 11 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi172g00093 276 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Sebi172g00093 276 CDD STKc_CAMK 10 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi172g00093 Sebi-Chr172 1009777 1010745 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi172g00093 11 274 EF-hand Containing Proteins AT1G50700 40.299 2.66e-73 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Sebi172g00093 Pkinase 5.7e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi172g00093 - K08794 qsa:O6P43_007686 446.817