Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi172g00088 ATGGAACTGTTTGCTGATGTCACCCCAAAAACAGCTGAAAACTTCAGGGCTCTATGCACTGGGGAGAAGGGGATTGGAAATTCTGGGAAACTTTTACACTACAAAGGATCTGCATTTCATCGTATTATTCCAGAGTTCATGTGTCAGGGAGGAGATTTTACGAGAGGGAATGGAACAGGAGGAGAGTCAATTTACGGGGCCAAATTTGCAGATGAGAATTTCAAGCTGAAGCATACTGGGCCTGGTATTCTTTCCATGGCAAATGCTGGACCCAATACAAATGGTTCCCAGTTCTTTATATGTACTACAAAGACTGAATGGCTTGATGGTAAACATGTTGTGTTTGGGAAAGTTGTTGATGGATACAGTGTAGTGAAGGAGATGGAGAAGGTGGGTTCAGGAAGTGGCAGGACTTTGGAACCAGTAATAATTGAAGATTGTGGGCAGATAGCAGAGAACTGA 462 0.4329 MELFADVTPKTAENFRALCTGEKGIGNSGKLLHYKGSAFHRIIPEFMCQGGDFTRGNGTGGESIYGAKFADENFKLKHTGPGILSMANAGPNTNGSQFFICTTKTEWLDGKHVVFGKVVDGYSVVKEMEKVGSGSGRTLEPVIIEDCGQIAEN 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi172g00088 153 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 2 148 IPR002130 GO:0000413|GO:0003755
Sebi172g00088 153 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 1 149 IPR002130 GO:0000413|GO:0003755
Sebi172g00088 153 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 34 51 IPR020892 GO:0003755|GO:0006457
Sebi172g00088 153 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 150 - -
Sebi172g00088 153 FunFam Peptidyl-prolyl cis-trans isomerase 1 151 - -
Sebi172g00088 153 SUPERFAMILY Cyclophilin-like 1 150 IPR029000 -
Sebi172g00088 153 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 110 125 IPR002130 GO:0000413|GO:0003755
Sebi172g00088 153 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 3 18 IPR002130 GO:0000413|GO:0003755
Sebi172g00088 153 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 82 97 IPR002130 GO:0000413|GO:0003755
Sebi172g00088 153 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 39 51 IPR002130 GO:0000413|GO:0003755
Sebi172g00088 153 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 97 109 IPR002130 GO:0000413|GO:0003755
Sebi172g00088 153 Gene3D - 1 153 IPR029000 -
Sebi172g00088 153 CDD cyclophilin_ABH_like 1 148 - -
Sebi172g00088 153 PIRSF Peptidylpro_ismrse 1 153 IPR024936 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi172g00088 Sebi-Chr172 960693 961154 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi172g00088 1 145 U-box Gene Family AT5G67530 50.000 8.57e-33 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi172g00088 K01802 - vvi:100261571 286.189