Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi172g00087 ATGAAAAAGCCCGATCTGGGTTTCTCCATGAACGACAATACCCATAAAGAAGATCAGGAGAAAGAAAACAGCGAGGAGGCCAAAGAAGGAGGAGCTATCGAGGCGGGCCCCATGCGTCGGGCCAGGGGCCGTCCACCGGGCTCAAAGAACAAGCCCAAACCGCCTGTATTTGTGACCAGAGACGGCCCAAATGCACTTCGAAGCCACGTCATGGAGATAGCAAACGGAGCAGACATCGCCGATAGCTTGATTCAGTTCGCGAGAAGGCGTCAGAGAGGTGTCTGCGTCCTCAGCGGCACCGGCACCGTCACCAACGTCACTCTCCGGCAGCCGTCGTCTCCCGGAGCTGTGATGGCACTTCAAGGCCGCTTCGAGATAATATCGTTGACCGGTTCGTTCCTGCCGGGAGCTTCACCGCCGGGATCGACGGGTCTAACGGTTTACATGGCGGGAGGTCAGGGACAAGTGGTGGGCGGTGGGGTGGTGGGTCCGCTGGTAGCATCAGGAGCGGTTATGATAATGGCGGCTACATTTTCCAATGCTGTGTATGAGCGGTTACCGTTAGCGATTGAGGAGGATGAACACGTTGGTGGTGGAGATCAAGGTGAGGGTTCATCTTCAATTCTTCCTGCAGCTGCAGCGTATAATAATTTGGCTCCTCCACCTCCACAGTTGAACCATGAAGCTTATTCTTCTCCTTTTATCCCAGGCTGA 714 0.5518 MKKPDLGFSMNDNTHKEDQEKENSEEAKEGGAIEAGPMRRARGRPPGSKNKPKPPVFVTRDGPNALRSHVMEIANGADIADSLIQFARRRQRGVCVLSGTGTVTNVTLRQPSSPGAVMALQGRFEIISLTGSFLPGASPPGSTGLTVYMAGGQGQVVGGGVVGPLVASGAVMIMAATFSNAVYERLPLAIEEDEHVGGGDQGEGSSSILPAAAAYNNLAPPPPQLNHEAYSSPFIPG 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi172g00087 237 SUPERFAMILY AF0104/ALDC/Ptd012-like 64 188 - -
Sebi172g00087 237 PIRSF ESCAROLA 2 221 IPR014476 GO:0003680
Sebi172g00087 237 Gene3D - 66 195 - -
Sebi172g00087 237 ProSiteProfiles PPC domain profile profile. 63 204 IPR005175 -
Sebi172g00087 237 CDD DUF296 67 150 IPR005175 -
Sebi172g00087 237 FunFam AT-hook motif nuclear-localized protein 66 195 - -
Sebi172g00087 237 Pfam Plants and Prokaryotes Conserved (PCC) domain 67 180 IPR005175 -
Sebi172g00087 237 MobiDBLite consensus disorder prediction 1 62 - -
Sebi172g00087 237 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 14 199 IPR014476 GO:0003680
Sebi172g00087 237 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi172g00087 Sebi-Chr172 954129 954842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi172g00087 1 231 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 59.592 3.32e-77 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi172g00087 - - qsu:112038015 294.664