Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi172g00074 ATGGAATCGCAGCGGAGCCCAGGAGCCACGAAAATTAGTGACAAAAAGACAAAACTTTCAGCACTGATAGTGGATGATGATGGTGTGATTCGCTCAATCCACAAGGCCATGCTAGAAGGGTTATTTAAAATTGAGACAAAACTGGCCAAGAATGGAAAGGAAGCAGTGGATCTGCATTGTTCTGGGGCAAATTTTGACATAGTTTTCATGGACAGAGAAATGCCTATCATGGATGGCATTGAGGCAACAAAACAGCTGCGTGCTATGGGTGTGAAGAGCATGATTGTGGGAATCACTACCCGTGCTGATGGTAAAGAAGGAGAGGAATTTCTAGCAGCTGGGTTGAACAAATGCTTTGGGAAGCCTCTTACCAGTGCAATCATTGAAGCTGTCTTGCAAGATCTTCAAAATTAA 414 0.4372 MESQRSPGATKISDKKTKLSALIVDDDGVIRSIHKAMLEGLFKIETKLAKNGKEAVDLHCSGANFDIVFMDREMPIMDGIEATKQLRAMGVKSMIVGITTRADGKEGEEFLAAGLNKCFGKPLTSAIIEAVLQDLQN 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi172g00074 137 Gene3D - 2 137 - -
Sebi172g00074 137 SUPERFAMILY CheY-like 18 135 IPR011006 -
Sebi172g00074 137 ProSiteProfiles Response regulatory domain profile. 20 136 IPR001789 GO:0000160
Sebi172g00074 137 PANTHER TWO-COMPONENT RESPONSE REGULATOR 15 137 - -
Sebi172g00074 137 SMART REC_2 19 132 IPR001789 GO:0000160
Sebi172g00074 137 CDD REC_hyHK_CKI1_RcsC-like 22 132 - -
Sebi172g00074 137 Pfam Response regulator receiver domain 22 128 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi172g00074 Sebi-Chr172 791895 792399 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi172g00074 3 135 Response Regulator Gene Family AT3G04280 45.324 1.28e-30 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Sebi172g00074 Response_reg 4.1e-19 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi172g00074 - - gmx:102665311 176.407