Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi172g00027 ATGAATGCAAAGGGACATAAGTTTGTGAGGTTTGAGGACTTCAAATCCGAGTCATCTTTTAGTATAGAGCAGGAAGATTCTGTAAACAATGGATATCACACAAGAAAATTTAGACCAAGTGTAAATGCTATTTTGAAGAGTATCGGAAGAAGACTAGAGAGTGGGTCAGAGAAGATAAAGAACTTGAGAAGACCTTCAGCTGTCCACCCTGTAAGCAATGGACAAACAAAAAAGCCGGCTTCTAGGCGCAAAATTCATGATCCACAGGGGCCAATGCTTCAGAGATGGAACAAAATCTTTGTAATCACTTGTGTGATGGCAGTCTCTGTGGACCCATTGTTCTTTTACATTCCAGTGATCCATGGGAAAGAGAAATGCCTTGATTTGAATGGAACATTGCAGATTACTACTAGTGTTCTTCGCACTTTCTTTGATCTTTTCTACATTCTCCGCATAATATTTCAGTTTCAAACAGGGTTTATTGCCCCTTCTTCTCGTGTTTTTGGAAGGGGTGATCTGATTGATGATCCAGTGGCAATAGTGAAAAGATACTTAAGCTCTCACTTCATCATTGACATTCTATCAATTCTTCCACTCCCACAGGTGGTTGTTTTAGCTATAATTCCAAACATCAAAGATTCAGTTCCATTTGTAGCAAAGGATTTGTTGAAGTATATAGTACTAATCCAGTATGTGCCAAGGCTGCTGCGGATCTATCCACTATTCAAAGAAGTAACTAGAACTTCTGGCATATTGACAGAGACAGCATGGGCTGGGGCTGTTTATAATCTTTTTCTCTATATGCTAGCAAGTCATGTGGTTGGAGCTAACTGGTATCTGCTTTCAATAGAATCAGAGGTGCGGTGCTGGCGCCGAGAGATGAATAAAGCTTCGCTCTTTCATGAATCTTACTTGGGCTGTGGAACCCGGGATCCAGCTGTCTTTCCACTTCTCAATAGCACTTGCTCTTTCGTTGACCCTGATCAAATCAAGGATACAAACACCTTCAATTTTGGAATATTTTTCGATGCTCTAGATTCAGGTGTGGTAGATTCAACAACTGATTTTCCTCAGAAATTCTTCTACTGCTTTTGGTGGGGTTTGCGCAATTTAAGTTCACTTGGACAAAACCTCAAGACAAGTACTTATATCGTGGAGATAGCCTTTGCAATCTTCATTGCCATCTTTGGATTGGTTTTATTCTCATTACTTATTGGAAACATGCAGAAATACCTGGAATCTACAACTGTTAGGGTGGAAGAGATGAGAGTGAAGAGGCGGGATGCTGAACGGTGGATGTCCCACCGTATGCTACCTGAGAACTTGAAGAAAAGAATTAGAAGGTATGAACAGTACAAATGGCAAGAAAATAGGGGTGTTGAGGAGGAGGCATTAATTCGTAACCTCCCTAAAGATCTCAGAAGGGACATAAAGCGCCATCTTTGCTTTACTTTAGTTAAAAAGGTGCCAATGTTTGAGAAAATGGATGAGCAGTTGTTGGATGCAATGTGTGATAGGCTGAAGCCAGTCCTTTATACAGAGAAGAGCTGCATTGTTCGTGAAGAAGATCCAGTTGATGAGATGCTTTTCATTATGCGTGGAAAAGTTTCTACTATGACAACAAATGGTGGAAGAACTGGTTTCTTCAACTCCTTATTTCTCGAGGCTGGTGACTTCTGTGGAGAGGAGCTTCTAACATGGGCTTTGGATCCCAACTCCTCCTCAAATCTACCCGTTTCAACTAGAACAGTAGAAACTATATCAGAAGTTGAAGCCTTTGCTCTTATGGCTGATGACTTGAAGTTTGTTGCATCCCAATTTCGACGTCTCATTAACAGCAAACAGCTCCAGCAGACTTTCAGGTTCTATTCCCCACAATGGAAGACATGGGCTGCCTGTTTCATACAAGCAGCTTGGCGTCGATACTGGAAAAAGAAGAATGATAGGTCATTTCTTGAAGCAGAAGAGAAGCTACAAGATGTTCTTGCAAATGAGGATGGCTCCACCCTAAGCCTTGGTGCAACCATATATGCATCAAGGTTTGCTGCCAATGCATTACGAGCCTTGAGAGAAAATAACAGACACAACAGAATGCCTCAGAGACTACTACCTCTGTTACCTCCAAAGCCAGCTGAGCCAGATTTCACTGCTCAGACAAACTAG 2163 0.4156 MNAKGHKFVRFEDFKSESSFSIEQEDSVNNGYHTRKFRPSVNAILKSIGRRLESGSEKIKNLRRPSAVHPVSNGQTKKPASRRKIHDPQGPMLQRWNKIFVITCVMAVSVDPLFFYIPVIHGKEKCLDLNGTLQITTSVLRTFFDLFYILRIIFQFQTGFIAPSSRVFGRGDLIDDPVAIVKRYLSSHFIIDILSILPLPQVVVLAIIPNIKDSVPFVAKDLLKYIVLIQYVPRLLRIYPLFKEVTRTSGILTETAWAGAVYNLFLYMLASHVVGANWYLLSIESEVRCWRREMNKASLFHESYLGCGTRDPAVFPLLNSTCSFVDPDQIKDTNTFNFGIFFDALDSGVVDSTTDFPQKFFYCFWWGLRNLSSLGQNLKTSTYIVEIAFAIFIAIFGLVLFSLLIGNMQKYLESTTVRVEEMRVKRRDAERWMSHRMLPENLKKRIRRYEQYKWQENRGVEEEALIRNLPKDLRRDIKRHLCFTLVKKVPMFEKMDEQLLDAMCDRLKPVLYTEKSCIVREEDPVDEMLFIMRGKVSTMTTNGGRTGFFNSLFLEAGDFCGEELLTWALDPNSSSNLPVSTRTVETISEVEAFALMADDLKFVASQFRRLINSKQLQQTFRFYSPQWKTWAACFIQAAWRRYWKKKNDRSFLEAEEKLQDVLANEDGSTLSLGATIYASRFAANALRALRENNRHNRMPQRLLPLLPPKPAEPDFTAQTN 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi172g00027 720 SUPERFAMILY Voltage-gated potassium channels 87 413 - -
Sebi172g00027 720 ProSiteProfiles cAMP/cGMP binding motif profile. 491 575 IPR000595 -
Sebi172g00027 720 Gene3D - 98 414 - -
Sebi172g00027 720 Gene3D Jelly Rolls 489 609 IPR014710 -
Sebi172g00027 720 MobiDBLite consensus disorder prediction 63 87 - -
Sebi172g00027 720 FunFam Cyclic nucleotide-gated ion channel 1 418 482 - -
Sebi172g00027 720 MobiDBLite consensus disorder prediction 697 720 - -
Sebi172g00027 720 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 59 715 - -
Sebi172g00027 720 FunFam Cyclic nucleotide-gated ion channel 1 489 607 - -
Sebi172g00027 720 Pfam Ion transport protein 95 419 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Sebi172g00027 720 CDD CAP_ED 491 623 IPR000595 -
Sebi172g00027 720 SUPERFAMILY cAMP-binding domain-like 420 608 IPR018490 -
Sebi172g00027 720 Gene3D Helix hairpin bin 418 482 - -
Sebi172g00027 720 SMART cnmp_10 491 622 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi172g00027 Sebi-Chr172 326553 330075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi172g00027 1 717 Ion Channels AT5G53130 65.789 0.0 938
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi172g00027 K05391 - gmx:100797784 1182.16