Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi172g00025 ATGGAACCTGCTTCTGGAATCCTTAAGATTCCTCCTGATTCCTTTTTGAAGTTGCATTCTACAGAGAAGAATGGGACTCAAATAACAAAGACACTGATATATTGTGCAGTTCACAGGGTCCCAAATCCAGATTCAGTACTGGTTGTGCATACACCCCAAGGGACATTCTCTCCAAGAACCTCGCTTCAAAATCACAAGGGATGCTTTAGAGGATCAAGGACGGCTTCGTCACAGAATATAGAACTACTTGAATCTTCAACCTCTGAAAGTTATGAGGTTGAGCCACTATCTGCTGCCAGGTGCAATAACTCAATTGAACAGCAACAAGGTATTCATGGATGGGGCCTCTTTGCCCGTAGAGATTTGCAAGAAGGAGAAATGGTTATTGAGTATCGTGGTGAGCAGGTAAGGCGTAGTGTTGCTGATCTGAGGGAAGCGAAATACCGTTCAGAAGGCAAAGATTGTTATGAGAGCCGGATTGTTCTTATTGCCAAGACCAATGTCTCTGCTGGTGAAGAACTAACCGACAATAACATCCTTATTCGTTTCCCCTTTCAACTAGAAGGTCAGCAACACCCTTACTGTGGCTATCCTGGTTTCAACTTAACTTGTACTAATGATAGCAAAACAGTTCTAAAACTTCCTTATAGCGGAGAATTCTATGTCCGCAACATCAACTATCTCAGACAACAGATACAAGTCTATGACCCTGATGATTGCCTTCCAAAACGTCTTCTAAGCCTCAATCTCTCAGCTTCTCCCTTCAATGCCATTTATCTCAGTAACTACACATTCTTAAGCTGCCCAACTCGGAACACAGAGTCACAATTCATTCCTGTTGACTGTCTTAGCAATTCTACACATTTTGTATCAGCTATTCCTTCAGTGAACTTGACCAATTCATTGCCTGAGTATTGCCATGTTATCAGAAACCTCTCAGTTCCAGTTGCAAGGTCAGGGCGATATGAGGAAATTTTCAGAGATCAACTTAGTGAAGATCTTCGATTAACATGGTATTCACCTGACTGTAGTTATTGCGAATTACAAGATGGCAGGTGCGGATTTGAGAGCAGAAACAGTGATCAAGTTCATTGTTTCTCTGATTACCAAACGGGTCGTTCACAAGATGGTCTTCGGGTTTTCAGAATCATCTTATTATCCATTGCGGGACCAGCTGTGATGTGTGCCATTGGGATGGCATGCTTCACGTGCTTCAAGCACAGAAGTGGCATTAGTAGTGCACCCAGAATTGCTGCTGCACAGAGGTTTGCACCAACAGCAATATTAATATCACCACAACCAGCCATTACTACGGTGGGTCTGGATGAGTCTACAATTGAGTCTTTTCAGAAGCTTGTACTTGGGGAGAGCCGAAGACTGCCGGGACCCAATGATGGATTTTGTTCAATATGCCGGTCAGAGTACAGCAGCAAGGAGACAATAAGATGCATTCCTGAGTGCTCACACTGTTTCCATGCTCACTGCATAGATGAATGGCTTCGCATGAACAGTACATGCCCACTTTGCCGCAACTCCCCCTCCCCTTCTCCTCTTGTTATGTCCAGTAATCCTTGA 1575 0.4381 MEPASGILKIPPDSFLKLHSTEKNGTQITKTLIYCAVHRVPNPDSVLVVHTPQGTFSPRTSLQNHKGCFRGSRTASSQNIELLESSTSESYEVEPLSAARCNNSIEQQQGIHGWGLFARRDLQEGEMVIEYRGEQVRRSVADLREAKYRSEGKDCYESRIVLIAKTNVSAGEELTDNNILIRFPFQLEGQQHPYCGYPGFNLTCTNDSKTVLKLPYSGEFYVRNINYLRQQIQVYDPDDCLPKRLLSLNLSASPFNAIYLSNYTFLSCPTRNTESQFIPVDCLSNSTHFVSAIPSVNLTNSLPEYCHVIRNLSVPVARSGRYEEIFRDQLSEDLRLTWYSPDCSYCELQDGRCGFESRNSDQVHCFSDYQTGRSQDGLRVFRIILLSIAGPAVMCAIGMACFTCFKHRSGISSAPRIAAAQRFAPTAILISPQPAITTVGLDESTIESFQKLVLGESRRLPGPNDGFCSICRSEYSSKETIRCIPECSHCFHAHCIDEWLRMNSTCPLCRNSPSPSPLVMSSNP 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi172g00025 524 CDD RING-H2_EL5-like 468 510 - -
Sebi172g00025 524 ProSiteProfiles Zinc finger RING-type profile. 468 510 IPR001841 -
Sebi172g00025 524 Gene3D SET domain 59 158 IPR046341 -
Sebi172g00025 524 SUPERFAMILY SET domain 109 177 IPR046341 -
Sebi172g00025 524 SUPERFAMILY RING/U-box 461 513 - -
Sebi172g00025 524 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 432 515 IPR013083 -
Sebi172g00025 524 Pfam Ring finger domain 468 510 IPR001841 -
Sebi172g00025 524 Pfam Wall-associated receptor kinase galacturonan-binding 178 236 IPR025287 GO:0030247
Sebi172g00025 524 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 171 514 IPR046948 -
Sebi172g00025 524 SMART ring_2 468 509 IPR001841 -
Sebi172g00025 524 Pfam Wall-associated receptor kinase C-terminal 301 367 IPR032872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi172g00025 Sebi-Chr172 307363 313143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi172g00025 177 516 C3H Transcription Factor Family AT2G46495 45.217 1.34e-92 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi172g00025 - - gmx:100799895 527.324