Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi172g00016 ATGGACTCTTCATCCGATCACCGTCCCAAAGCGGCGGTGCAGCGAGGCGGTGCCGCTGGGGAAATCGTGCCGCGCGAGAAGCACTTGCCGCAGCTTAAGAATCGAAGCCAGAAACACAAGAACGAAGTCGCCGATCTCAGTACCGGTTCGGAGTCGGAGCTGAGTGGAAACTCGGCGAGAAATCAAAGGCTGAAGAAGAAGAAGGAGGAGGAGGAGGAAGCTATTGATCAAGACAACGAAGGTGATTGCGAGAAGGGACTATTGAATGTGTACCGGGTCAAGAAAGATTCACGAGCCAAAAATGGAGTTCAAGATACCAAACAACTGGATTTATCCAGCAAAACCAAGGAGGGTGGAAGTTTGATGTGTCATCAGTGCCAGCGGAATGATAAGAGTGGTGTTGTCTTTTGCTCAAGTTGCAACAGAAAACGCTATTGTTATGAATGCATTGAGAAATGGTACCCAGGAAAAACCCGAGAGGAAGTTGCGAATGCATGTCCATTTTGTTGGGGCAATTGCAACTGCAAAGCTTGCTTACGGGAGGTTCCTGTGCTAAAGTACCCAGAAGTAAATCCCAGTGTCAAAATACAAGGACTGCTGTACTTACTATGTAAAGCCCTGCCAATTCTGAGGCATATTCACAGGGAGCAGAGCTTGGAATTAGAGATTGAAGCCAAAATAAGGGGTAATCAACTGCAAGAAGTTGACATAACAAGAACAAAGCTAGATGAAAATGAGCGCTTGTACTGTGACAATTGCAGTACATCCATAATTGGATTTTACCGTAGCTGCCCCAACACCAGTTGCTCTTATGATCTATGTCTCACGTGCTGTCAAGAGCTCAGAGAGGGTTGCCAACCTGGAGGTGTAGAAGCTGAAACATCTCATGAACAATTTGTAGAGAGTTTTCATAATTGTGATTCAACAAGAATTCAGCATAAAACACATAGTAAAAGATATGGGTGGGAGAGCCAACTTGCACCTGCTAGTTTTGATTTTCAAGCTGACACATTCTCTCCCTTCCCTGAATGGAAAGCTAATAACGATGGTAACATTCCATGTCCTCCTAAGAAGCGTGGAGGTTGTGGTACTGCATTGCTAGAACTAAGACGCATTTACAAAGCTAATTGGGTAGCAAAACTGCTAAATAATGCTGAGGAACTCACTAGAGATTATATGCCACCGGATGTGGATATTACCGGAAAGTGTTCTTTATGCCAGCCAAATTTGGTTAAGGGAAAAGTCAATCCTGAAGTCAGGAGAGCAGCATTCCGGGATGGCAGTAATGATAATTTCTTATATAGCCCAAATGCCCTTGACATTGATGATGAGATTGAGCACTTCCAGAGGCACTGGATGAGGGGAGAACCTGTGGTTGTGAGAAATGTTCTGGACAAGACATCTGGTCTTAGTTGGGAACCAATGGTAATGTGGAGGGCTCTCAGAGAAACAGGTTCCAGAGTGAAGTTCACAGAGGAAACACGTAGTGTAAAGGCCATTGATTGCTTGGATTGGTGTGGGGTTGAGATTAATATTCACCAATTTTTTAAAGGCTACCTAGAGGGTCGAATGCATAAAAGTAAGTGGCCAGAAATGTTGAAATTGAAAGATTGGCCTTCATCAACCTCTTTTGAAGAGCGTTTGCCCAGGCATGGCACTGAATTCCTTGCTGCACTCCCCTATAGGGACTACACTGATCCAAAATCAGGTCTTTTAAATTTTGCCAGTAAACTTCCTGCTAACTCACTTAAACCAGATTTGGGACCCAAAACGTACATTGCTTATGGATTTTCTGAAGAGCTAGGTAGAGGAGATTCTGTGACAAAACTGCACTGTGATGTGTCTGATGCGGTCAATGTGCTGACACACACAAACAAAGTGAATATAGCTCCATGGCAGAGAAAAAGCATAGACAAATTGAAAAAGAAGTATGATGAAAAAGATGCTTATGAACTTTATTGTGAAGCATTACGTGATGTTGATGGAGGATCTAAATCTAAAGCATTGAATCATGATCAAAAGGCAGAGAATGGAGTTAACAGGATTTCACCAAGTAGCCAAATGGATCAGTGCATTTCATTTATAGCTGAAGACTTGAGTGGGAAGTCAGAAACACAGAACACGGAACAGTGTGATGAGAATAGAAATTGCTCTCGGACTGACAGAAATGTCACTATAAGGAGCTCCTCTGTGGAAGATAGTGTTAGTATAACATCTACTGAAGTTTCACATCATTCCAGCTTAGCTTCAAGTAATACGAGCAATAAGAAAGACAGAACAAGGGTTGATATTATAGATGATAATGTGTCTGGTGATCCCAAGTTAGCATCCACACAAGGCCGGGGGAAAGATTCTTTAGAAATTGGAAATGGAGCTGAGGTTGTCCTTGGTGGCGCTGTTTGGGACATTTTCCGTCGGCAAGACGCCCCAAAGCTAATTGAGTACTTAAGAAAGCATAAGAAGGAATTCCGTCATATCAACAATCAACCTGTAGAATCTGTTATACATCCCATTCATGATCAGACTCTATTCTTAAATGAGAGGCATAAGAAACAGCTAAAAAGGGAGTTTAATGTTGAACCATGGACTTTTGAGCAACACCTTGGTGAGGCTGTTTTCATTCCAGCAGGATGTCCTCATCAAGTGAGAAATAGACAATCGTGTATAAAGGTTGCACTTGATTTTGTTTCTCCGGAAAATGTTGGAGAATGTTTACGACTAACTGGAGAGTTTCGTTTGCTCCCAAAATACCACAGAGCCAAGGAGGACAAATTGGAGGTTAAAAAGATGGCCCTTTATGCTGTAAGTAAAGCTGTTAGAGAAATCAAAGAACTGATGAAGGTCACTGAGTAA 2853 0.4266 MDSSSDHRPKAAVQRGGAAGEIVPREKHLPQLKNRSQKHKNEVADLSTGSESELSGNSARNQRLKKKKEEEEEAIDQDNEGDCEKGLLNVYRVKKDSRAKNGVQDTKQLDLSSKTKEGGSLMCHQCQRNDKSGVVFCSSCNRKRYCYECIEKWYPGKTREEVANACPFCWGNCNCKACLREVPVLKYPEVNPSVKIQGLLYLLCKALPILRHIHREQSLELEIEAKIRGNQLQEVDITRTKLDENERLYCDNCSTSIIGFYRSCPNTSCSYDLCLTCCQELREGCQPGGVEAETSHEQFVESFHNCDSTRIQHKTHSKRYGWESQLAPASFDFQADTFSPFPEWKANNDGNIPCPPKKRGGCGTALLELRRIYKANWVAKLLNNAEELTRDYMPPDVDITGKCSLCQPNLVKGKVNPEVRRAAFRDGSNDNFLYSPNALDIDDEIEHFQRHWMRGEPVVVRNVLDKTSGLSWEPMVMWRALRETGSRVKFTEETRSVKAIDCLDWCGVEINIHQFFKGYLEGRMHKSKWPEMLKLKDWPSSTSFEERLPRHGTEFLAALPYRDYTDPKSGLLNFASKLPANSLKPDLGPKTYIAYGFSEELGRGDSVTKLHCDVSDAVNVLTHTNKVNIAPWQRKSIDKLKKKYDEKDAYELYCEALRDVDGGSKSKALNHDQKAENGVNRISPSSQMDQCISFIAEDLSGKSETQNTEQCDENRNCSRTDRNVTIRSSSVEDSVSITSTEVSHHSSLASSNTSNKKDRTRVDIIDDNVSGDPKLASTQGRGKDSLEIGNGAEVVLGGAVWDIFRRQDAPKLIEYLRKHKKEFRHINNQPVESVIHPIHDQTLFLNERHKKQLKREFNVEPWTFEQHLGEAVFIPAGCPHQVRNRQSCIKVALDFVSPENVGECLRLTGEFRLLPKYHRAKEDKLEVKKMALYAVSKAVREIKELMKVTE 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi172g00016 950 ProSiteProfiles JmjC domain profile. 567 912 IPR003347 -
Sebi172g00016 950 SMART cupin_9 548 912 IPR003347 -
Sebi172g00016 950 MobiDBLite consensus disorder prediction 722 783 - -
Sebi172g00016 950 ProSiteProfiles Zinc finger RING-type profile. 123 169 IPR001841 -
Sebi172g00016 950 SUPERFAMILY Clavaminate synthase-like 445 935 - -
Sebi172g00016 950 Pfam JmjC domain, hydroxylase 798 895 IPR003347 -
Sebi172g00016 950 MobiDBLite consensus disorder prediction 1 78 - -
Sebi172g00016 950 MobiDBLite consensus disorder prediction 722 755 - -
Sebi172g00016 950 Coils Coil 54 81 - -
Sebi172g00016 950 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 33 947 IPR045109 GO:0032454|GO:0033169
Sebi172g00016 950 FunFam Transcription factor jumonji (JmjC) domain-containing protein 696 921 - -
Sebi172g00016 950 Gene3D Cupin 430 921 - -
Sebi172g00016 950 MobiDBLite consensus disorder prediction 26 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi172g00016 Sebi-Chr172 216225 223491 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Sebi172g00016 JmjC 3.8e-16 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi172g00016 K15601 - vvi:100258626 1079.32