Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi172g00015 ATGGAAGCCGAAACTCGACGGAAAATCGAGGAGATGGTGTTGGATATACTAAAGAAATCCAATATAGAAGAGACCACTGAGCTCAGCGTCCGAATCGCTGCCTCGGAGCGACTCGGCATCGACCTCTCCGACCCGGAGAGCAAGCAGCTTGTCAGAACCGTCGTCGAGTCCTATCTTCTCACCGCCGCGGCCGAGGAGAAACCGCCCGAAGAGTCTCAGTCGAGAGAGGCGGTGAAACCTAAGAAGGAGGACTCCGAACGCGTTATTTGCCAGCTATCAAACAGGAGGAATGTGGTGGTCCGAGATTTCAAAGGGACAGCATTGGTGTCAATTAGGGAGTACTATCATAAAGATGGAAAACAGCTTCCCGGTCCTAAAGGGATAAATTTATCTGCTGATCAATGGTCAACCTTCAAGAAGAGTGTTCCCGCCATAGAGGAAGCTATCACAAGGATGGAAGGAAGGATGGGATCAGAGCTTAATGGTGAGAAGAATGGAGAGGTGTCAAATTCAGTTGTTGATGTTGCTCCTCTTGAGCCTGTCCCTATTGAGATCATCCGTTTTGATGGGAAGAATTACGAATTTTGGGCTCAACAGATGGAATTACTCTTGAAACAGATAAAGATTGAATATGTGCTTACTGAACCATGCCCAAATGCTACATTAGGGGAAGATGCAACTGCTGCAGCCAAAGCTTCTGAAAAGAGATGGGTACATGATGATTTAATGTGTCGTCGCAACATCTTGAGCCATTTATCTGATCATCTTTTCAATCAGTATGCAAACAGAAAAATGAGTGCTAAGGAGTTATGGGAAGAGTTAAAATTTGTTTATCAGTTTGAGGAATATGGAACCAAGAGATCCCAGGTGAAAAAGTATATCGAATTTCAGATGGTTGATGAGAAAGCTGTTGTTGAGCAAATTCAAGAATTTAATAGCATTGCAGACTCTATCGTTGCTGCTGGAATGTCTATTGAGGAGAACTTTCATGTCTGTGTCATCATTTCAAAGCTTCCACTATCCTGGAAAGACTTTTGCATCAAGTTAATGCACGAGGAGTACCTACCTTTCTGGAAGTTAATGGAACGTATAAGGATAGAGGAAGAAACTCGCAATGGAGTCAAACAAGTGGGTGAACCTTCTAATGGTTATAGGTTTCGCCAGGCCAATAAAGGTGGAGCCAGGGTAGCTGACAATAACAATAAGCCACCGGGGACAGAATGTGAAGAAGAAAATGTTACCTAG 1245 0.441 MEAETRRKIEEMVLDILKKSNIEETTELSVRIAASERLGIDLSDPESKQLVRTVVESYLLTAAAEEKPPEESQSREAVKPKKEDSERVICQLSNRRNVVVRDFKGTALVSIREYYHKDGKQLPGPKGINLSADQWSTFKKSVPAIEEAITRMEGRMGSELNGEKNGEVSNSVVDVAPLEPVPIEIIRFDGKNYEFWAQQMELLLKQIKIEYVLTEPCPNATLGEDATAAAKASEKRWVHDDLMCRRNILSHLSDHLFNQYANRKMSAKELWEELKFVYQFEEYGTKRSQVKKYIEFQMVDEKAVVEQIQEFNSIADSIVAAGMSIEENFHVCVIISKLPLSWKDFCIKLMHEEYLPFWKLMERIRIEEETRNGVKQVGEPSNGYRFRQANKGGARVADNNNKPPGTECEEENVT 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi172g00015 414 Pfam Transcriptional Coactivator p15 (PC4) 90 140 IPR003173 GO:0003677|GO:0006355
Sebi172g00015 414 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 3 154 IPR045125 GO:0003713|GO:0060261
Sebi172g00015 414 Pfam gag-polypeptide of LTR copia-type 237 372 - -
Sebi172g00015 414 SUPERFAMILY ssDNA-binding transcriptional regulator domain 89 151 IPR009044 GO:0003677|GO:0006355
Sebi172g00015 414 MobiDBLite consensus disorder prediction 68 85 - -
Sebi172g00015 414 Gene3D Transcriptional Coactivator Pc4; Chain A 80 156 IPR009044 GO:0003677|GO:0006355
Sebi172g00015 414 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 3 60 IPR014876 -
Sebi172g00015 414 MobiDBLite consensus disorder prediction 64 85 - -
Sebi172g00015 414 Pfam DEK C terminal domain 5 59 IPR014876 -
Sebi172g00015 414 MobiDBLite consensus disorder prediction 375 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi172g00015 Sebi-Chr172 209670 212584 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Sebi172g00015 Retrotran_gag_2 4.6e-17 CL0523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi172g00015 - - lang:109345725 549.666