Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi172g00014 ATGAAGGTTGAGGTGGGTTCAGGGCGCGTGTTATGGGATGATGAAGAGAAAGCCACAGTTGCGGCTGTTCTGGGCGCTAGAGCTTTCGAATTTTTGATCACGAACTCTGTGTCGAATGAGAGTGTGTTAATGGCTGTTGGGAGTGACGATAGCCTGCAGAACAAGCTCTCTGATCTCGTGGACCGTCCCAACATGTCCAATTTCAGTTGGAACTATGCGATTTTCTGGCAACTTTCTCAGTCAAAATCTGGGGACTGGGTTCTGGGTTGGGGAGATGGGTGTTGCAGGGAACCCAACGAGGAAGAAGAAGAGGGTGGAGGAGTTAGAGGAATCCTTAGCCTTCGCATGGAGGATGGGATGCAGCAGAGTTTGAGGAAGAGGGTGCTGCAGAAACTGCACACCACGTTTGGTGGTTCAGACGAGGACAATTACGCTTTTGGCCTTGACCGTGTCACTGACACCGAGATGTTCTTTCTTGCTTCCATGTACTTCTCTTTCCCACGCGGACATGGTGGACCTGGTAAGTGTTTTGCCTCAGGGAAACATTTGTGGATGAAATCTGTTTCTGATTACTGTGTGCGATCTTTCTTGGCTAAATCCGCTGGAATTCAGACAGTTGTTTTAGTACCTACTGATTTGGGAGTGGTTGAGTTGGGTTCTGTGAGAATGCTAACTGAGAGCTTTGAGTTATTACAGGCCATACAATCTGTGTTTTCCACTCAATCATCATACCCTAAGGTGGCTGTGGTGAATAACAAGAGTGATGAGAGTGTCCTTTTTCCTATTGGAGGGGACAATAAGGTTGATGGAGTTCCAAAGGTTGTTGTGAACACAGGTCGTACAACTACTTTCAGGGAGAAGCTTGCTATTAGAAAAATGGAGGATAGGCCATGGGGAGTCCACCCCAATGGGAGTAGCATTAACTTTCCCAATGTTAGAAATGGTGTTCATGGTTCAAATTGGGGAGGAGTCAATCATGGTGTGAGGCAGCCTACTCCAACTCCAAGTCCTGCTGAAATTTTGCTCATAGGAGCTACTTCAATGCCTTCTGTCAGACCAGTTATTGCTGAATCTGAGCTTTCTGATGTTGAGGCTTCTTGCAAGGAGGAGCAACCTGGTCCTGCTGATGATAGGAGGCCTAGGAAGCGAGGCAGGAAGCCTGCTAATGGAAGGGAAGAACCCCTCAATCATGTGGAAGCTGAGAGGCAAAGGCGTGAGAAGCTGAACCAACGTTTCTATGCATTAAGAGCTGTAGTTCCTAATATCTCCAAGATGGACAAGGCATCATTACTTGGTGATGCCATTGCTTACATCAATGAGCTTCAGGCAAAACTCAAGATCATGGAGTCTGAAAGAGAGAGATTTGGAAGCACTTCAAGGGATGGAAGATCAGAAAGTCATCAGAATATAACTCCTGATGTGGACATTCAAGCTGCAGAAGATGAGGTCATTGTAAGGGTGAGCTGCCCTATTGATGCTCATCCTGTTTCAAAAGTAATCCAAACATTCAAAGAGACACAAATCAGTGTTGTAGAGTCAAAACTCACTGCTTCAAATGATACTATCTTCCACACATTTGTAATTAAGTCCCAAGGATCTGAACAGCTTACAAAGGACAAGTTGATTGCAGCATTTTCTCAAGAATCCAACTCCTTACAGCCATTGTCATCGGTTGGGTAG 1680 0.4583 MKVEVGSGRVLWDDEEKATVAAVLGARAFEFLITNSVSNESVLMAVGSDDSLQNKLSDLVDRPNMSNFSWNYAIFWQLSQSKSGDWVLGWGDGCCREPNEEEEEGGGVRGILSLRMEDGMQQSLRKRVLQKLHTTFGGSDEDNYAFGLDRVTDTEMFFLASMYFSFPRGHGGPGKCFASGKHLWMKSVSDYCVRSFLAKSAGIQTVVLVPTDLGVVELGSVRMLTESFELLQAIQSVFSTQSSYPKVAVVNNKSDESVLFPIGGDNKVDGVPKVVVNTGRTTTFREKLAIRKMEDRPWGVHPNGSSINFPNVRNGVHGSNWGGVNHGVRQPTPTPSPAEILLIGATSMPSVRPVIAESELSDVEASCKEEQPGPADDRRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKIMESERERFGSTSRDGRSESHQNITPDVDIQAAEDEVIVRVSCPIDAHPVSKVIQTFKETQISVVESKLTASNDTIFHTFVIKSQGSEQLTKDKLIAAFSQESNSLQPLSSVG 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi172g00014 559 Pfam Helix-loop-helix DNA-binding domain 396 442 IPR011598 GO:0046983
Sebi172g00014 559 Gene3D - 385 457 IPR036638 GO:0046983
Sebi172g00014 559 FunFam Transcription factor bHLH13 385 459 - -
Sebi172g00014 559 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 395 455 IPR036638 GO:0046983
Sebi172g00014 559 Coils Coil 438 458 - -
Sebi172g00014 559 MobiDBLite consensus disorder prediction 362 403 - -
Sebi172g00014 559 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 392 441 IPR011598 GO:0046983
Sebi172g00014 559 SMART finulus 398 447 IPR011598 GO:0046983
Sebi172g00014 559 CDD bHLH_AtAIB_like 389 466 - -
Sebi172g00014 559 PANTHER MYC 38 544 IPR045084 GO:0003700|GO:0006355
Sebi172g00014 559 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 52 238 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi172g00014 Sebi-Chr172 195319 197117 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi172g00014 8 559 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 49.183 0.0 541
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi172g00014 bHLH-MYC_N 2.1e-52 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi172g00014 - - gmx:100801502 755.362