Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi172g00005 ATGGATTCTGGTGCTGTATTGGCATTGCCTGTGAACAATGAATTCAAAACAAGGGAACCTCCAGATTTTGAGGACGACTTTGTAGAGAAAGATCCTACCGGCCGGTATATTCGGTACAAAGAAATCTTGGGCAAGGGTGCTTTCAAGACTGTTTATAGGGGCTTTGATGAAGTTAATGGAATAGAAGTTGCTTGGAACCAAGTCCAAATTGATGAAATCTTGCAGTCAGCAGATGATCTTGCAAAATTGTATTCCGAAGTTCATCTATTGAAGTCTCTGAAACATGAAAATATCATAAAGTTCTTTAATTCCTGGATTGATGATAAGAAGAAAACTGTTAACATTATTACTGAGTTATTCACATCTGGAAATTTAAGGCAGTACCGTCAGAAGCATAGATATGTTGACATGAAAGCCATAAAAGGTTGGGCTAGACAAATTCTTCAAGGCTTAGTATATCTTCACAGTCACAAGCCACCTATTATACACAGAGACTTGAAATGTGACAACATCTTCGTCAATGGAAACCATGGAGAAGTTAAGATAGGAGACCTTGGTTTGGCAATTGTCATGCAGCAACCAACTGCTCGAAGTGTTATTGGGACTCCTGAGTTTATGGCTCCAGAACTGTATGAAGAGGAATACAATGAACTTGTTGATGTCTATTCGTTTGGGATGTGCATGTTAGAGATGGTTACTTTTGAGTACCCGTACAGTGAATGCAGAAATCCAGCCCAAATCTATAAGAAAGTTACCTCTGGCATTGAACCTGCATCCCTTAAAAGGGTGAGTGATCCCCAAATAAAGGGGTTTATCAAAAAATGCCTTGTTCCAGCATCCAAGAGATTGTCTGCAGAGGAGCTTCTTAAAGACCCATTTCTGCAAGTTGAGAGTCCAAAGGATCCAATCCTTGATCCCTTACAGTTACCTAGAAAATCTCTAAAAGCTTTAGATCTGTCCAAATCTGGTCATCTATCCATGGACCTAGATGCTGACTACAAACAGATCCCTATGAGTATAAGTGCTGAGAACAGCCAGGGAAGTCCACATTGTCCAGTTCTTGAAGTTCAGAGGACATATAAAAACAATGAGTTTAGGTTGAAAGGGACCAAAAATGATGATAACTCAGTATCATTAATCTTGCGTATTGCTGATTTAAATGGTCAAGTAAGGAATATACATTTTCTCTTTTACATTGACACGGATACTGCAGTCTCTGTTGCCTCAGAGATGGTTGAAAATTTGGAGCTGGCAGATCATGATGTAGCCTTCATAGCTGAGCTCATTGATTACCTGATAATGAAACTTCTACCTGGGTGGAAGCCTTCATCTGATTATTCCTCAAGTGGAGGATTAAGTCTGTGCGATGGCTCTCCAACACTTAGAGATGACCAAACCTTAATGCCATGCCCATGTGGTTCTGTGGTCAGTAGTGTTCCCTCTGAATTGGTTTTTGATCAAGATAGCATTTCTGGGTTTAAAACTACTCAAAGACAAGGTTTTGCGACAACTGAAGTGAGCTGCATATTTAACATTGCTGATAATGCTACTTTTGAGAGTGAGCATAATTCTTCTCCTAGTTTGGCTAGCTTGGAAGATCAATATTCACAAGAATCTGCAGCTTCTGAGATAGTTATTGAAGATGCTTGCATGAAAAATGACAACTGTCTTGATTCTGATATTGATGGGAGTTATAAAGGATTGAGTTGGTCCACCTCCGAACTGGAGCTCGGGGATACATATTTTGAAGGCTGTAAATTGCAGACTACAAATTGCAGTGCTGAAGAAGGGATTATGATAAATGAATTCTCAAAGAACTCTCACACTCCAACCCCAGCTTTTTGTGAAACATCTAATGTTCTGAGCTTGAATAGCAGTTATTCTTCTCTGTCTTTAGCCGACAAAGACATTGACCTTGAACTAAAGCTTGAGCTTGATGCAATCGAGTCTAAGTATCAGCATTGGTTTCAAGAACTTTCTAGAATGAAGTCCGAGACATTGGAAGCCACCAGAAGGAAATGGATTGCCAAGAAGAAACTTGCTGTTCATTAA 2052 0.3962 MDSGAVLALPVNNEFKTREPPDFEDDFVEKDPTGRYIRYKEILGKGAFKTVYRGFDEVNGIEVAWNQVQIDEILQSADDLAKLYSEVHLLKSLKHENIIKFFNSWIDDKKKTVNIITELFTSGNLRQYRQKHRYVDMKAIKGWARQILQGLVYLHSHKPPIIHRDLKCDNIFVNGNHGEVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYEEEYNELVDVYSFGMCMLEMVTFEYPYSECRNPAQIYKKVTSGIEPASLKRVSDPQIKGFIKKCLVPASKRLSAEELLKDPFLQVESPKDPILDPLQLPRKSLKALDLSKSGHLSMDLDADYKQIPMSISAENSQGSPHCPVLEVQRTYKNNEFRLKGTKNDDNSVSLILRIADLNGQVRNIHFLFYIDTDTAVSVASEMVENLELADHDVAFIAELIDYLIMKLLPGWKPSSDYSSSGGLSLCDGSPTLRDDQTLMPCPCGSVVSSVPSELVFDQDSISGFKTTQRQGFATTEVSCIFNIADNATFESEHNSSPSLASLEDQYSQESAASEIVIEDACMKNDNCLDSDIDGSYKGLSWSTSELELGDTYFEGCKLQTTNCSAEEGIMINEFSKNSHTPTPAFCETSNVLSLNSSYSSLSLADKDIDLELKLELDAIESKYQHWFQELSRMKSETLEATRRKWIAKKKLAVH 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi172g00005 683 SUPERFAMILY Protein kinase-like (PK-like) 38 345 IPR011009 -
Sebi172g00005 683 SMART serkin_6 37 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi172g00005 683 ProSiteProfiles Protein kinase domain profile. 37 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi172g00005 683 Pfam Protein kinase domain 39 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi172g00005 683 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Sebi172g00005 683 FunFam probable serine/threonine-protein kinase WNK9 120 299 - -
Sebi172g00005 683 Gene3D - 375 444 - -
Sebi172g00005 683 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 19 666 - -
Sebi172g00005 683 CDD STKc_WNK 35 294 - -
Sebi172g00005 683 FunFam Probable serine/threonine-protein kinase WNK1 22 118 - -
Sebi172g00005 683 Gene3D Phosphorylase Kinase; domain 1 22 118 - -
Sebi172g00005 683 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 377 433 IPR024678 GO:0004674|GO:0005524
Sebi172g00005 683 Gene3D Transferase(Phosphotransferase) domain 1 120 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi172g00005 Sebi-Chr172 24118 27889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi172g00005 622 683 MAP Kinase Kinase Kinase AT5G41990 41.935 5.64e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Sebi172g00005 Pkinase 2.6e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi172g00005 K08867 - qsa:O6P43_027404 924.465