Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi171g00059 ATGGAGATGCCAAGAGGAGAAGCTGTTCTATGTTCTGTGGCATTGTTCTGGTTTTGGAGCTCTGCAAATGCCTTGCTTTCTCCTAAGGGAATAAACTTTGAAGTGCAAGCTTTAATGGGCATAAAAGCTTCTCTAGTGGATCCTCATGGTATTCTAGATAATTGGGATGGGGATGCAGTTGATCCATGTAGCTGGAATATGGTCACATGTTCCCCTGACAACCTTGTCATAAGCCTGGGCATTCCCAGTCAAAATTTATCTGGTACTTTATCTCCAAGTATAGGAAACCTAACAAATCTTCGAACTGTGGTGCTACAGAATAACAACATAACTGGACCAATCCCTTCAGAGCTGGGAAAACTTTCAAAACTTCAAACTCTTGATCTCTCTGATAACTTCTTCAATGGGGAAATTCCTCCCTCTCTGGGTCATCTGAGAAGCCTCCAGTACTTTGACTTGTCCTTCAACAATTTGAGTGGTGCTGTACCTAAAATTTTGGCCAAATCATTCAGTATTGTTGGAAACCCTCTTGTCTGTGCTACAGGAAAAGAAACAAACTGCCGTGGGATGACACCCATCCCTATGTCCATGAACTTAAACAGTTCTGAGGATGCTTTAACATCAGGCAGACCAAAAGCTCACAAATTGGCCATTGCCTTTGGTTTGAGCCTAGGATGCCTCTGCTTATTAGTTCTTGGTTTTGGATTTTTTCTATGGAGGAGGCACAAGCATAATCAACAAACATTCTTTGATGTTAAAGGTAAACCAGTCTTGGACTGGGGCACAAGAAAACAAATTGCCTTAGGAGCAGCAAGGGGACTATTATACCTCCATGAGCAGTGTGATCCAAAGATAATCCATAGAGATGTGAAAGCTGCTAATATATTGCTTGATGACTATTGTGAGGCAGTAGTTGGAGATTTTGGGTTGGCAAAGCTTTTAGATCACCAAGATTCACATGTCACAACTGCAGTGAGGGGCACAGTAGGGCATATTGCACCAGAGTATCTTTCCACAGGACAATCATCTGAAAAGACTGATGTCTTTGGATTTGGCATTCTGCTTCTTGAATTGATCACAGGCCAGAGGGCTCTAGAATTTGGAAAGGCAGCCAACCAAAAAGGAGCCATGCTTGATTGGGTAAGGAAAATCCATCAGGAGAAGAAGCTTGAGTTGCTTGTTGACAAGGATCTCAAGAGCAACTATGACAGGATTGAGCTTGAGGAAATGGTTCAAGTGGCACTCTTGTGTACACAATATCTTCCAGGCCATAGACCAAAAATGTCTGAAGTTGTACGTATGCTTGAAGGTGATGGATTAGCAGAGAAATGGGAAGCTTCTCAAAGTGCTGACACTAACAAGTGCAAACCACACGAGTTTTCTTCATCAGATCGATATTCTGATCTTACTGATGACTCTTCATTGTTAGTCCAGGCCATGGAGCTTTCAGGTCCTAGGTGA 1461 0.4257 MEMPRGEAVLCSVALFWFWSSANALLSPKGINFEVQALMGIKASLVDPHGILDNWDGDAVDPCSWNMVTCSPDNLVISLGIPSQNLSGTLSPSIGNLTNLRTVVLQNNNITGPIPSELGKLSKLQTLDLSDNFFNGEIPPSLGHLRSLQYFDLSFNNLSGAVPKILAKSFSIVGNPLVCATGKETNCRGMTPIPMSMNLNSSEDALTSGRPKAHKLAIAFGLSLGCLCLLVLGFGFFLWRRHKHNQQTFFDVKGKPVLDWGTRKQIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGAMLDWVRKIHQEKKLELLVDKDLKSNYDRIELEEMVQVALLCTQYLPGHRPKMSEVVRMLEGDGLAEKWEASQSADTNKCKPHEFSSSDRYSDLTDDSSLLVQAMELSGPR 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi171g00059 486 Pfam Leucine rich repeat 98 158 IPR001611 GO:0005515
Sebi171g00059 486 SUPERFAMILY L domain-like 34 170 - -
Sebi171g00059 486 Pfam Protein kinase domain 258 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi171g00059 486 SUPERFAMILY Protein kinase-like (PK-like) 252 441 IPR011009 -
Sebi171g00059 486 ProSitePatterns Serine/Threonine protein kinases active-site signature. 285 297 IPR008271 GO:0004672|GO:0006468
Sebi171g00059 486 ProSiteProfiles Protein kinase domain profile. 148 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi171g00059 486 FunFam Leucine-rich repeat receptor-like protein kinase 31 176 - -
Sebi171g00059 486 Pfam Leucine rich repeat N-terminal domain 34 71 IPR013210 -
Sebi171g00059 486 MobiDBLite consensus disorder prediction 446 468 - -
Sebi171g00059 486 Gene3D Transferase(Phosphotransferase) domain 1 240 455 - -
Sebi171g00059 486 FunFam Somatic embryogenesis receptor-like kinase 1 245 455 - -
Sebi171g00059 486 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 19 446 - -
Sebi171g00059 486 SMART serkin_6 171 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi171g00059 486 Gene3D Ribonuclease Inhibitor 30 195 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi171g00059 Sebi-Chr171 1594494 1598015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi171g00059 252 486 Receptor kinase-like Gene Family AT5G16000 87.137 1.43e-143 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Sebi171g00059 Pkinase 5.4e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi171g00059 - - gmx:100806650 456.062