Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi171g00058 ATGTTGAAGGAAGTTATAACAAGCAATGGCGGTGGCGGTTCCAACAACTGGTCTCGCGTATGTGACACGTGTCGATCAGCACCTTGCAGAGTTTACTGCCATGCTGACTCAGCATACCTGTGCTCAGTCTGTGACGCTAGCATCCATGCGGCTAACCGTGTGGCTTCAAGGCACGAGCGTGTGTGGGTCTGTGAGGCTTGTGAACGTGCTCCTGCAGCCTTTCTCTGTAAAGCTGATGCTGCTTCCCTCTGTTCTTCTTGTGATGCTGATATACACTCTGCTAACCCATTGGCTAGTCGCCACCACCGTGTACCTCTTCTCCCTTCTCTTTCTCTGCACAAGATCATGACAGCTTCATGGTTACTGCCAAATCCTTTGAAGGAGAATGAGGATTTCTTGTTTGGTGCTGATGAGTATTTGGACCTTGTGGATTGTAATTCATGTGGTGATTTCAGTAATGTTCACTATGATGGTCATCATGATCAACAACAGAACCAACAGCATAATTACAATACTGTCCCTCAGAACTATGCAGTTGTTCCATTTCAGCGTGGAGGAGAAGCTTCGCGAGCTCATATGCAACAACAATTTCAACAGGGCCTGGATTTTGACTCCTCAAAAGCTGGTTTCAGTTACAACGGTTCTCTTAGTCAAAGTGTTTCAGTTTCATCAATGGATGTTGGCATTGTACCAGAATCAACATTAAGCGACATCTCAGTTTCACATTCAAAATCAACAATAGGGACAAGTGAACTATTTCCTCCAATTCCAATGCCTTCACATCTTGCTCCAATGGACAGAGACAAAGTCCTAAGATACAGAGAGAAAAAGAAGACAAGAAAGTTTGAAAAGAAAATTAAGTATGCTTCAAGGAAGGCCTATGCAGAGACAAGACCCCGAATTAAAGGTCGATTTGCAAAGAGAACAGATGTAGAAGCTGAAGTGGACCAGATGCTATCCTCAACTCTGATGACAGAAGCTGGATGTAGCATTGTTCCCTCTTTTTGA 1008 0.4425 MLKEVITSNGGGGSNNWSRVCDTCRSAPCRVYCHADSAYLCSVCDASIHAANRVASRHERVWVCEACERAPAAFLCKADAASLCSSCDADIHSANPLASRHHRVPLLPSLSLHKIMTASWLLPNPLKENEDFLFGADEYLDLVDCNSCGDFSNVHYDGHHDQQQNQQHNYNTVPQNYAVVPFQRGGEASRAHMQQQFQQGLDFDSSKAGFSYNGSLSQSVSVSSMDVGIVPESTLSDISVSHSKSTIGTSELFPPIPMPSHLAPMDRDKVLRYREKKKTRKFEKKIKYASRKAYAETRPRIKGRFAKRTDVEAEVDQMLSSTLMTEAGCSIVPSF 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi171g00058 335 ProSiteProfiles Zinc finger B-box type profile. 59 106 IPR000315 GO:0008270
Sebi171g00058 335 CDD Bbox1_BBX-like 63 106 - -
Sebi171g00058 335 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 21 324 IPR045281 GO:0009909
Sebi171g00058 335 Pfam B-box zinc finger 61 106 IPR000315 GO:0008270
Sebi171g00058 335 ProSiteProfiles Zinc finger B-box type profile. 16 63 IPR000315 GO:0008270
Sebi171g00058 335 CDD Bbox1_BBX-like 20 63 - -
Sebi171g00058 335 ProSiteProfiles CCT domain profile. 266 308 IPR010402 GO:0005515
Sebi171g00058 335 Pfam CCT motif 268 308 IPR010402 GO:0005515
Sebi171g00058 335 SMART bboxneu5 16 63 IPR000315 GO:0008270
Sebi171g00058 335 SMART bboxneu5 64 106 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi171g00058 Sebi-Chr171 1529651 1531059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi171g00058 1 335 C2C2-CO-like Transcription Factor Family AT3G02380 53.973 4.58e-114 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Sebi171g00058 zf-B_box 4.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi171g00058 - K12135 gmx:100782635 443.351