Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi171g00036 ATGGAACCAGGGGCAATAGAAGAGGAAAGCATGGAAGTTTTTCAACAATTGACTGCCCTCCCAGGTTTCTGGAACAAGTGGGGTGTTAGAATGAGCACTGAAAGTGCTGAACGTGAGGCAGTTGTATCATCTCCTTGTGATGTTGGTGATGATCTAGAAGATGTTGTTTCATCATCCAATGGGGTTGTAATTGGGGATCTGGGTGTTCTTAGCAGCACAATGCTTGCAAGGCTCGATTTGAGTTTGGCATGTTTCTCTGAGAAAGTTTCCAACTTGAACATTTTTGCTATGCATCTGGCAACCATGGAGAGTTATTTTGAGACGTTGGTTAACGACCACATGAGGCTTGATTCTTTTGAAAAGGTTGTGGAGTTTGATCTGTTGTCTGGGGTGTTGGAATCGGAGGTCAGAGAGTTGGATGGGTTCTTGGACACTCTTCAAGCTGGGATTGCTGAAGCTAGAGAGAGGGTGTGTTCTTGCAATCACTTAGGAAAGGCTTTCATTACAATGCAAGACAAGTTGCTTGACACTGAACAATATTTGAAGCAATCTGAAGAGCAGTTTACTGAAATTAAGATACAGTCATCTAACTTCCAGAGGACTTTGTCTTCTTTGATGAAGGCAGAAAATGGTAATGGTGAAGCAGGTGAAATTGTCAAAGAGGGTGATAAATCTTTGAATGTAAATGCAGAGATAAAGCTGCAAACAATTGAGCAACAAAGATGTGTTCTGAGAATGCTAGAGAAATCTTTGGCAAGAGAAATGGATCTTGAGAACAATTTATATGATTCAAGAGAAATTCAAGAAAAGCTAAAACTAAGGATGTTCTCTTTAGAGCAAGAGCTAGTTCACATGGAGGAAGAAGCAATTGATGTTTGGGAAAGATGGTTTGAGGCAGACAATGCAAGTGAGATCCTGATGGGAATTTCAAAAGGCCTGTTAGGTAGACTCCAGATTTCTCAGTTCAATTTGAATGGTTCAAGTCATCGTGAATTTGAGCTTCGAGCTAAGCTTGAAACTCTTGTAGAACAATTGAGAGCCAGAGATATTACAATGGACAAGATTGAAAGCAGCACTGCTCAATTAAACGGCTCTCTTCTAGGTCAGACAAATGAAGCAAAAGATAACCTGAAGAATGCTGAAGATAAATTAATCATTGCCAATTCTGAAGTCTCCACTTTAAAAGATAGGGTGTCTTTACTAGAGAAGCAGCTAAAAGAATCTGAATCCCAGCTACTGAATGCAAAATCCTCTGCTGATGAATATCAGAAGCAATATAATGTTGTGTGTTCTGAAGTAAGAGACATGGGAAATCTTATTGTTGAACTGAAAGAAACTGTATGTAATGCCAAAAGTAGGGCTGATAGTGCAGAAGCTAAGTGTAAGTTATTGATTGAGACTAATTCAAAACTCAATGAAGAGCTGACTCTTCGTGGAGACATGTCTATGAGAGTGGATTTACTTGAGAGGCAGCTAAAGGAATCTAATCTACAATTGCAGAATACAGTAGCATCTGCTGAAGCTAGTCTGGAGAAACAAAGTATGTTGTATTCCACAATTAGTGATATGAAAAATGTGATAAAGGATCTTAAGTCAAAAGCTTCTAAAGCTGAGAGTCGGGCTGACAGTGCAGAGGAGAATTGTATCATATTATCCGAATCTAATGCTGAGTTAAATGAGGAACTAAGCTTCTTGAGGAATAGGTTGGAATGCTTGGAGGGATCCCTGCACCGAGAGGAGGAAGCAAAAATAGCAACAGCAAAGGACATTGGAAAGCAGACCAAATTTTTTAAAAATTTGGTAACACAACTGGCTATTGAGAGAGAGCGTCTTAAGCAGCAGGTGATAGAGAAAAAAAAAATGTGGATAGGAAAAAACACATATTCTTCAGGACTAAGAGACCCAGAAGTTATGATGCTTTTCGGTGTGGCTTCTGGTTTCGAGGAGGAGGAACCTGGTGAAGAGGCGCTGAGGTACCTGGAATGGGAAATTCTCTTGGCTGTTAACAATTTGGAGAGGAATGCTGGGTTGGAACATGATGATGAGAACTTTGCTGATTCATATTTAGCGATTCAAGATGGCTATATATCCACATCTGATTACGACATACTTTTTGGGCAGTTTCTGGAGAATGAGAGTGCCTTGAAGGGTAGCCCTCCAGCTGCCAAGAGTTTTGTGGAGAATCTCCCTCTGGTGGAATTGACAGAGGAGGAGTTGCGGGGTAAGGAGGTGGCTTGTGCCATTTGCAAAGATGAGATCATGTTGGAGGAGAAGGTGAGGAGGCTCCCTTGCTCCCATTGTTATCATGGAGATTGCATTTTGCCATGGTTGAGTATTCGCAACACATGCCCTGTTTGCCGGTTTGAGTTGCCCACAGATGATCCTGATTATGAGCAGATTTGA 2403 0.4103 MEPGAIEEESMEVFQQLTALPGFWNKWGVRMSTESAEREAVVSSPCDVGDDLEDVVSSSNGVVIGDLGVLSSTMLARLDLSLACFSEKVSNLNIFAMHLATMESYFETLVNDHMRLDSFEKVVEFDLLSGVLESEVRELDGFLDTLQAGIAEARERVCSCNHLGKAFITMQDKLLDTEQYLKQSEEQFTEIKIQSSNFQRTLSSLMKAENGNGEAGEIVKEGDKSLNVNAEIKLQTIEQQRCVLRMLEKSLAREMDLENNLYDSREIQEKLKLRMFSLEQELVHMEEEAIDVWERWFEADNASEILMGISKGLLGRLQISQFNLNGSSHREFELRAKLETLVEQLRARDITMDKIESSTAQLNGSLLGQTNEAKDNLKNAEDKLIIANSEVSTLKDRVSLLEKQLKESESQLLNAKSSADEYQKQYNVVCSEVRDMGNLIVELKETVCNAKSRADSAEAKCKLLIETNSKLNEELTLRGDMSMRVDLLERQLKESNLQLQNTVASAEASLEKQSMLYSTISDMKNVIKDLKSKASKAESRADSAEENCIILSESNAELNEELSFLRNRLECLEGSLHREEEAKIATAKDIGKQTKFFKNLVTQLAIERERLKQQVIEKKKMWIGKNTYSSGLRDPEVMMLFGVASGFEEEEPGEEALRYLEWEILLAVNNLERNAGLEHDDENFADSYLAIQDGYISTSDYDILFGQFLENESALKGSPPAAKSFVENLPLVELTEEELRGKEVACAICKDEIMLEEKVRRLPCSHCYHGDCILPWLSIRNTCPVCRFELPTDDPDYEQI 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi171g00036 800 SUPERFAMILY Tropomyosin 368 577 - -
Sebi171g00036 800 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 707 793 IPR013083 -
Sebi171g00036 800 PANTHER WPP DOMAIN-INTERACTING TAIL-ANCHORED PROTEIN 1 55 616 IPR039976 -
Sebi171g00036 800 Coils Coil 363 425 - -
Sebi171g00036 800 CDD RING-H2_RNF126-like 746 787 - -
Sebi171g00036 800 Coils Coil 454 474 - -
Sebi171g00036 800 SMART ring_2 746 786 IPR001841 -
Sebi171g00036 800 ProSiteProfiles Zinc finger RING-type profile. 746 787 IPR001841 -
Sebi171g00036 800 Coils Coil 268 288 - -
Sebi171g00036 800 FunFam E3 ubiquitin-protein ligase RING1-like 707 793 - -
Sebi171g00036 800 Coils Coil 485 505 - -
Sebi171g00036 800 Pfam Ring finger domain 746 787 IPR001841 -
Sebi171g00036 800 Coils Coil 520 582 - -
Sebi171g00036 800 SUPERFAMILY RING/U-box 734 793 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi171g00036 Sebi-Chr171 767852 777880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi171g00036 662 799 C3H Transcription Factor Family AT5G15820 55.797 6.91e-46 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi171g00036 - - aprc:113867066 826.624