Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi171g00007 ATGGCCTTCGAATTGATGGACATGTTGAAGGAAGAAGCAGACAGACAGACCACCATGGGTGCAAAGGCCATCTATGATTTCAACGTGCTTCGAGTCATTAGCGAGCTCGCTATTACTGCTATTGTTTATATTTGGACAAGAAGGCATAAAGGAAAGGTGAGCAGAATGAAGAGGCAATATTTTCCAGTTTCGAGCAAAAGCTCGAAATGTTCATTTCAAGGAGCTCGAAGTGCCTCCAATGAAGTCCTCCTGAAACTTAAGCCCCTAGAAATTAAGATCGATCAAGTGAGTGAAGATGGAAGGGGAAGGGTTCAGCTGAAGCAGATCGAGAACAAGATTAGCCGCCAAGTGACCTTTTCAAAGCGGAGAATGGGTCTGCGAAAGAAAGCGCATGAAATCTCTGTGCTCTGCGATGCTCAAGTAGCATTGATTGTTTTTAACGCTAAAGGCAAACTCTTTGAGTTTTCATCTGAATCCAGCATGGAAAACGTCCTGGAGCGATATGAGAGACATGCCACAGTGCAACTTGATGGAGCTGATAAAGAATCGCAGAGAAACTGGTCCTTGGAATGCTTCAAGCTCACCGGCAAAGTTGAAGTCTTAGAGAGGAATTTAAGGAATTTCGTGGGAGATGATCTGGATCCGTTGAGCTTGAGAGAGCTTCAGAGTTTGGAGCATCAGCTTGACACAGCTCTAAAGCGCATCCGAACAAGAAAGAACCTAGTTATGAATGACTCCATCTCAGAGCTGCAGAAAAAGGCAAAGGCGTTGCAGGAGCAAAACAACATGCTATCAAAGAAGATTAAAGAGAAAGAGAAGACAGTTGCTGAACGTCCACCCTGCTGGTCAGAAACAGCCCTAGGCCAAAATTCTTCTGCTTTCAACTTGTGCCCTCCCGAGCTACAATCACCACAAAGACTTGTTCCTTCTTTAACACTCGGATTCAGAAAAGAATGCAGCATACTTTTACCACTTCCCCTCTTCAAATCCTGGGTTAATTTAGCGTTTCCCAGTGAAGATTGGGATTTGGGAGGAGAAAGCTCAATAAAGAAACACAACCTGAATAAAATGGGCAAATATCTCAATTGA 1089 0.4389 MAFELMDMLKEEADRQTTMGAKAIYDFNVLRVISELAITAIVYIWTRRHKGKVSRMKRQYFPVSSKSSKCSFQGARSASNEVLLKLKPLEIKIDQVSEDGRGRVQLKQIENKISRQVTFSKRRMGLRKKAHEISVLCDAQVALIVFNAKGKLFEFSSESSMENVLERYERHATVQLDGADKESQRNWSLECFKLTGKVEVLERNLRNFVGDDLDPLSLRELQSLEHQLDTALKRIRTRKNLVMNDSISELQKKAKALQEQNNMLSKKIKEKEKTVAERPPCWSETALGQNSSAFNLCPPELQSPQRLVPSLTLGFRKECSILLPLPLFKSWVNLAFPSEDWDLGGESSIKKHNLNKMGKYLN 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi171g00007 362 PRINTS MADS domain signature 121 136 IPR002100 GO:0003677|GO:0046983
Sebi171g00007 362 PRINTS MADS domain signature 136 157 IPR002100 GO:0003677|GO:0046983
Sebi171g00007 362 PRINTS MADS domain signature 101 121 IPR002100 GO:0003677|GO:0046983
Sebi171g00007 362 Pfam K-box region 181 268 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sebi171g00007 362 ProSiteProfiles K-box domain profile. 184 274 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sebi171g00007 362 PANTHER SERUM RESPONSE FACTOR HOMOLOG 101 262 - -
Sebi171g00007 362 FunFam MADS-box transcription factor MADS-MC 111 184 - -
Sebi171g00007 362 SMART madsneu2 99 158 IPR002100 GO:0003677|GO:0046983
Sebi171g00007 362 SUPERFAMILY SRF-like 100 176 IPR036879 GO:0003677|GO:0046983
Sebi171g00007 362 ProSitePatterns MADS-box domain signature. 101 155 IPR002100 GO:0003677|GO:0046983
Sebi171g00007 362 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 109 155 IPR002100 GO:0003677|GO:0046983
Sebi171g00007 362 Gene3D - 111 182 IPR036879 GO:0003677|GO:0046983
Sebi171g00007 362 CDD MADS_MEF2_like 100 177 IPR033896 GO:0000977|GO:0045944
Sebi171g00007 362 Coils Coil 240 274 - -
Sebi171g00007 362 ProSiteProfiles MADS-box domain profile. 99 159 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi171g00007 Sebi-Chr171 142954 168611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi171g00007 100 275 MADS-box Gene Family AT1G26310 62.222 1.02e-71 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Sebi171g00007 K-box 2.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi171g00007 K09264 - gmx:100820188 317.005