Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi170g00029 ATGGCGTTGCCAACCGAGTTCATTGCTGACATAAATTCCTCCAAAGAATCGTGGCATATAGTTGCAAGAGTTATCCGTTTGTGGAAAATACCCAATTTCAACAATGCAAAAATCCCTCTTGCTTTGGAGATGGTTCTTTGTGATGAAAGGGGTGGAAAAATTCACGCTGTTGTTAGAAGGACTTTAGTTTACAAATTTCAATCAACCCTAATTGAGGGAGCTGCTTATTCCATATCTAATTTTGGGGTTGGTGAAAATTATGGTGAGTTCAAGTATTCTATGCATTTGTACAAGATCAACTTCGAGTACCATACAAGAGTTGTTTTGATGAGGGACTGCAGTATTCCCCGATTTCAATATTCATTTGTGTCTTTGGCGGACATAATGGCTCCTACTTTTGACAACAGCTACTTAGTTGACATAATGGGAGTGTTGACTGGTATTGGTACTGAGAAGGAGTATGAGAGGAATCGAAAAAAATATCGCATGAATGTGATGGAACTGGAAATAGATGGGTCCAAAATAGAATGTGCTCTGTTCGAAAATTACCTGGATGATTTGAATGCTTTTCTTGCTTGTGGTAATACTACAAATGTGGTAGTTGTTGTTCAGCTTGCAAAAGTAAAGTCATTCAAAGGAAAAGTGTCTCTGCAAAATGCTCTCCATGCTACTAAGTTGTTTTTCAACCCTGACTTTCAAAAAGCTGTGGAATTAAGGAAAAGGCTTGAAGAAAATACTGAGTGTGTTTCTCAACCTCTAAGTCAAATTGCTGAAGCTCCAAAGTTGTCTCCTGAGGAGGAATTCTTGACTCATACTATAATGAAGACTATTGAGGAGCTAAAGGACTCTAATGAGGAATGTTGTTGTGTTGTCTTGGCTACGATCAAGCATCTTATTCATGGAGAAGACTGGTGGTACAAAGCTTGCAGATGTGGCACGTCAGTGTTTTCTGATTCGAAAATGTATTATTGTGGAACCTGTAACAAGCATATCGTTTCTGTTTTTTATAGGTACCGTCTGAAGGTTCGTGTTATTGATGCAACTGATTTTGCAACCTTTGTCATTTTTGATCGAGACGCTGCATCTATTCTGGATATAAGTTGTGCTGATTTGTTGGAGTCTACTGTTCAGCCCAATGACAAGCATTTCCCACCTGAAATCTCTGCTTTGGTTGATAAAACTTTTTTGTTCAAAGTAGAAAATAAGATTGTCTCAAATTCCAGGTTTGAGACATCTTATAAAGTGAGGAAGCTCTGCTCCGACAGTGAACTGATCAATCAATTTAAAGACTTGCATTTCTCAAAAAAATATGATGACTCTTTAGACTATGTAGTACCTGAAGGACAATTAATGGTTGGGGTTGACTTATCCAATGATCTGCAAAAAGAGGTGGTTTCTGTGACCCGCTTATCTGATTCAGTGAATGATGATGAAAATAATACTGTCTTATTGGGAACTGCTGATGGCGAAGGGCTCACAATGGATTCTGATTGTATCACTCCATGTAAAAGAAATTCTGCTGATAGTACTGATGATCCCATCCTTGCCTCATCCTCCATCAAGTTGAAAAAAGTGATAAAACAAGAAAAAGACTGA 1596 0.3816 MALPTEFIADINSSKESWHIVARVIRLWKIPNFNNAKIPLALEMVLCDERGGKIHAVVRRTLVYKFQSTLIEGAAYSISNFGVGENYGEFKYSMHLYKINFEYHTRVVLMRDCSIPRFQYSFVSLADIMAPTFDNSYLVDIMGVLTGIGTEKEYERNRKKYRMNVMELEIDGSKIECALFENYLDDLNAFLACGNTTNVVVVVQLAKVKSFKGKVSLQNALHATKLFFNPDFQKAVELRKRLEENTECVSQPLSQIAEAPKLSPEEEFLTHTIMKTIEELKDSNEECCCVVLATIKHLIHGEDWWYKACRCGTSVFSDSKMYYCGTCNKHIVSVFYRYRLKVRVIDATDFATFVIFDRDAASILDISCADLLESTVQPNDKHFPPEISALVDKTFLFKVENKIVSNSRFETSYKVRKLCSDSELINQFKDLHFSKKYDDSLDYVVPEGQLMVGVDLSNDLQKEVVSVTRLSDSVNDDENNTVLLGTADGEGLTMDSDCITPCKRNSADSTDDPILASSSIKLKKVIKQEKD 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi170g00029 531 Pfam Replication factor-A C terminal domain 292 403 IPR013955 -
Sebi170g00029 531 Gene3D - 266 428 IPR012340 -
Sebi170g00029 531 Coils Coil 151 171 - -
Sebi170g00029 531 Pfam Domain of unknown function DUF223 43 138 IPR003871 -
Sebi170g00029 531 Gene3D - 5 112 IPR012340 -
Sebi170g00029 531 Gene3D - 114 251 IPR012340 -
Sebi170g00029 531 CDD RPA1_DBD_A_like 20 107 - -
Sebi170g00029 531 SUPERFAMILY Nucleic acid-binding proteins 8 112 IPR012340 -
Sebi170g00029 531 PANTHER OS03G0429900 PROTEIN 8 400 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sebi170g00029 531 SUPERFAMILY Nucleic acid-binding proteins 119 246 IPR012340 -
Sebi170g00029 531 CDD RPA1_DBD_C 277 402 IPR047192 -
Sebi170g00029 531 SUPERFAMILY Nucleic acid-binding proteins 275 416 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi170g00029 Sebi-Chr170 928097 930636 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi170g00029 18 371 Core DNA Replication Machinery Family AT4G19130 23.607 1.59e-18 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi170g00029 - - vun:114180582 397.512