Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi16g00190 ATGCATTCTCACTCTCTCCTATTAAGGAACACAAATCCAGATGGTTTGAAACATCCCTCAGTTTCTGTTACTCCTTCTCTGATGGCCCTTGAAACAAATTTCAAAGAAAACTATGTCTCACAGACAATGCATTTGCAAGAAAACTACTTGAATCCCAGCATGAAAGATGAGCTTCCTTTTGGGGCTCCTTCCTCACAGGGTTTCTTGCAAGATTTTCACCATATTGACCAATTTCATGTGAATGCCTCCTCATCCAACAATCCAGTTTTTGGGGTCCAAACTCCAAATTTTGATCCTTTTAATAATACAACCAGTGAGTGTGCACCCACAGATTTTGAAGCTTATGAGGGCAAGCCTTTTGCTGAGAGCAATGGTAGTGGACATGCTCACATTATGGACAATTTCCAATATGAAGGTTATAGTTTGAACCTCCCTGGGAGGAATCAACTGGATATGATGGTTGCAAACCAAAGTTATATGCCCTTTAATCCTCTAGAAACCAAGCCTTTGAATTTTGTTGTACCGGATGAAGTCTCATGCATATCCCCAGCAAATTATTATAAAAGAGTTGACATGAATAAAAACAACAGGGAATCTCCAAACACTAGAAGAACATATAAAGCTAGAAAGAAGTCCAACATAGTGAAGGGGCAATGGACAGTGGATGAAGATAGATTGTTGATTCAACTGGTTGAACAATATGGAGTAAGGAAGTGGTCTAATATTGCTCAAAAGTTGCCTGGGAGAATAGGGAAACAATGCAGAGAACGGTGGCATAATCATTTAAGGCCTGACATTAAGAAGGACATATGGACTGATGAAGAGGATAAGATACTGATCCAAGCTCATGCAGAGATAGGGAATAAGTGGGCAGAGATTGCAAAAAGATTGCCAGGAAGAACAGAGAACTCAATTAAAAACCATTGGAATGCAACCAAGAGAAGGCAATATTCAAAAAGAAAATGTCGCTCTAAGTACCCTAGAGGCTCTCTTCTGCAGGACTATATCAAAAGCTTGAACTTGGACCAAAACCCACCAAGAGACTTTCGAAAAAAATCATCTTCTGCTAATTATAATACTAATGCCAAGACAAACAATACTAGCACAAGCAAAACAGCACCACCTCAGCCCCAGAGTGCAGATCAATTTTGTTCCAATGACCGCATGGTGCCAACAAACTTTGACTTCAATGAGGTCCCAGATTTTTGCTTGGATGATAATTTGTTTGAAGAGGGGTGTGGTATAGATTCTTTGCTAGATGATTTTCCAAGTGTTCCTACGATGAATGAGAAAGATTTTGATGGAAAAATGCTAACTATGGAGGGAAAGCAAATTGATAAGGGAAAAGGAGCCATGCAAGTTGTGAATCTTGATGAGCATCACTTTGAGGCAGAGGAGATGATGGCATCCACTGTGGGGATTGAAGTTAAGAAGGAGATGGATTTGGTGGAGATGATGTGTCATGTTAATGGAAGTATTGATGTCTAA 1488 0.3978 MHSHSLLLRNTNPDGLKHPSVSVTPSLMALETNFKENYVSQTMHLQENYLNPSMKDELPFGAPSSQGFLQDFHHIDQFHVNASSSNNPVFGVQTPNFDPFNNTTSECAPTDFEAYEGKPFAESNGSGHAHIMDNFQYEGYSLNLPGRNQLDMMVANQSYMPFNPLETKPLNFVVPDEVSCISPANYYKRVDMNKNNRESPNTRRTYKARKKSNIVKGQWTVDEDRLLIQLVEQYGVRKWSNIAQKLPGRIGKQCRERWHNHLRPDIKKDIWTDEEDKILIQAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQYSKRKCRSKYPRGSLLQDYIKSLNLDQNPPRDFRKKSSSANYNTNAKTNNTSTSKTAPPQPQSADQFCSNDRMVPTNFDFNEVPDFCLDDNLFEEGCGIDSLLDDFPSVPTMNEKDFDGKMLTMEGKQIDKGKGAMQVVNLDEHHFEAEEMMASTVGIEVKKEMDLVEMMCHVNGSIDV 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi16g00190 495 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 211 266 IPR017930 -
Sebi16g00190 495 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 267 317 IPR017930 -
Sebi16g00190 495 PANTHER MYB PROTEIN-RELATED 216 370 - -
Sebi16g00190 495 MobiDBLite consensus disorder prediction 1 20 - -
Sebi16g00190 495 CDD SANT 219 262 IPR001005 -
Sebi16g00190 495 ProSiteProfiles Myb-like domain profile. 263 313 IPR001005 -
Sebi16g00190 495 Gene3D - 215 268 - -
Sebi16g00190 495 SMART sant 267 315 IPR001005 -
Sebi16g00190 495 SMART sant 215 264 IPR001005 -
Sebi16g00190 495 FunFam Transcription factor MYB119 269 333 - -
Sebi16g00190 495 MobiDBLite consensus disorder prediction 304 325 - -
Sebi16g00190 495 SUPERFAMILY Homeodomain-like 213 309 IPR009057 -
Sebi16g00190 495 CDD SANT 271 313 IPR001005 -
Sebi16g00190 495 Pfam Myb-like DNA-binding domain 216 262 IPR001005 -
Sebi16g00190 495 Pfam Myb-like DNA-binding domain 271 310 IPR001005 -
Sebi16g00190 495 FunFam Transcriptional activator Myb isoform A 215 268 - -
Sebi16g00190 495 ProSiteProfiles Myb-like domain profile. 211 262 IPR001005 -
Sebi16g00190 495 Gene3D - 269 330 - -
Sebi16g00190 495 MobiDBLite consensus disorder prediction 341 381 - -
Sebi16g00190 495 MobiDBLite consensus disorder prediction 350 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi16g00190 Sebi-Chr16 3102812 3104785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi16g00190 149 423 MYB Transcription Factor Family AT4G18770 55.208 3.66e-96 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi16g00190 Myb_DNA-binding 4.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi16g00190 K09422 - gmx:100816653 712.22