Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi16g00175 ATGGAAGGTGGGCATGAATATAAGAAGGGATTCTGGAATGTAGAGGAAGACATGATTCTAATGGATTACATAAAGGAGAATGGAACAGGGAAGTGGAATCGTATAACTAAAGCTACAGGTTTGAAGAGAAGTGGTAAAAGTTGCAGGCTGAGGTGGATGAATTATCTGAGTCCTGGTGTCAAGCATGGGGACTTCTCAAATCAAGAAGAAGACTTAATCATTCGCCTCCACAAGCTCCTTGGAAATAGGTGGTCTTTGATTGCAGGGAGGATTCCAGGGAGAACTGACAACCAAGTGAAGAATTATTGGAACACTCATTTAAGCAAAAAGCTTGGTGTTATGAAGGAAAAGAGGTCTCCAAAGACTGTCCTTAATGAACAAAAGGATGATAATTGCAATAGCACATCAGAGTCCATTGATGAAGGTGAAAAGCTTGTCCAAAAAAGCTCCTTTAATGGTGATCTCAACTTGGCAAGCACTCACAAAGGAATTGTTACAGATGATTTTGGGAGCGTCTTCCGTTTTGCTAATAATGAGCTCAATCTATATTCTCCTTACTTTATGGAGTCTTTTCAAGAATGTTTTCTTGACCTTTGA 597 0.397 MEGGHEYKKGFWNVEEDMILMDYIKENGTGKWNRITKATGLKRSGKSCRLRWMNYLSPGVKHGDFSNQEEDLIIRLHKLLGNRWSLIAGRIPGRTDNQVKNYWNTHLSKKLGVMKEKRSPKTVLNEQKDDNCNSTSESIDEGEKLVQKSSFNGDLNLASTHKGIVTDDFGSVFRFANNELNLYSPYFMESFQECFLDL 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi16g00175 198 Gene3D - 64 139 - -
Sebi16g00175 198 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Sebi16g00175 198 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 138 - -
Sebi16g00175 198 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Sebi16g00175 198 Pfam Myb-like DNA-binding domain 63 107 IPR001005 -
Sebi16g00175 198 Pfam Myb-like DNA-binding domain 10 56 IPR001005 -
Sebi16g00175 198 Gene3D - 9 61 - -
Sebi16g00175 198 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Sebi16g00175 198 SUPERFAMILY Homeodomain-like 7 103 IPR009057 -
Sebi16g00175 198 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 56 IPR017930 -
Sebi16g00175 198 CDD SANT 12 56 IPR001005 -
Sebi16g00175 198 SMART sant 8 58 IPR001005 -
Sebi16g00175 198 SMART sant 61 109 IPR001005 -
Sebi16g00175 198 FunFam Transcription factor WER 63 135 - -
Sebi16g00175 198 CDD SANT 65 107 IPR001005 -
Sebi16g00175 198 FunFam MYB-related transcription factor 8 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi16g00175 Sebi-Chr16 2902540 2903357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi16g00175 5 113 MYB Transcription Factor Family AT5G40330 80.734 6.70e-64 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi16g00175 Myb_DNA-binding 3.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi16g00175 K09422 - zju:107418407 230.335