Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi16g00173 ATGATGAAGAACTTGTACTTGTTTAAAGAAATTTCTCAAAATGTGAGGTCAGGGAGAAGGCTCTCTCTAGGGGAATACAAGAGAGCAATTTCATGGTCTAAGTATTTGGTATCCTCTGGAGCAGCTATAAAGGGAGAAGCTGAAGAGGATTGGAGTGCAGATTTGTCTCAGTTGTTCATTGGTTCCAAATTTGCTTCTGGCAGACATAGCAGAATCTACAGAGGAATCTACAAGCACATGGATGTGGCAATTAAGCTGGTGAGTCAACCAGAGGAGGATGAGGATTTGGCTGTTTTGCTTGAGAAGCAATTTACTTCTGAGGTTGCTTTGCTGTTTCGGTTGCGCCATCCAAATATCATCACTTTTGTTGCAGCTTGCAAGAAACCTCCTGTCTTTTGTATAATTACTGAATATTTGGCTGGGGGCTCTTTGAGAAAATACCTGCATCAACAAGGACCACATTCAGTTCCTCTAAAACTTGTTCTCAAATTAGCCTTGGATATTGCAAGGGGGATGCAATATCTTCATTCTCAGGGTGTACTTCATAGGGATCTCAAATCAGAAAATCTTCTGTTAGGTGAAGATATGTGTGTAAAAGTGGCAGATTTTGGGATCTCATGCTTAGAATCCCAAACTGGCAGTGCTAAAGGATTTACTGGAACTTACCGTTGGATGGCACCTGAAATGATCAGAGAAAAGAATCATACCAAGAAAGTAGATGTCTATAGTTTTGCTATAGTTCTATGGGAGCTTCTAACAGGACTCACACCATTTGAGAACATGACACCAGAGCAGGCAGCATATGCAGTGACTCACAAGAATGCAAGGCCTCAGCTACCATCTGACTGTCCATGGGCATTTAGTCATCTAATCAACAGATGCTGGTCAGGCAATCCAAATAAACGGCCACATTTTGATGAGATAGTCTCAATCTTAGAGAGCTATACTGAATCACTTGAGCAGGATCCAGAATTTTTCTCTACTTACAAACCACGTTCAAGTAACATAATTCAGAGATGCTTACCAAACTGTAATGCTGGCCATAAATCTGCTAGCAATGCTTAG 1065 0.4113 MMKNLYLFKEISQNVRSGRRLSLGEYKRAISWSKYLVSSGAAIKGEAEEDWSADLSQLFIGSKFASGRHSRIYRGIYKHMDVAIKLVSQPEEDEDLAVLLEKQFTSEVALLFRLRHPNIITFVAACKKPPVFCIITEYLAGGSLRKYLHQQGPHSVPLKLVLKLALDIARGMQYLHSQGVLHRDLKSENLLLGEDMCVKVADFGISCLESQTGSAKGFTGTYRWMAPEMIREKNHTKKVDVYSFAIVLWELLTGLTPFENMTPEQAAYAVTHKNARPQLPSDCPWAFSHLINRCWSGNPNKRPHFDEIVSILESYTESLEQDPEFFSTYKPRSSNIIQRCLPNCNAGHKSASNA 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi16g00173 354 SUPERFAMILY Protein kinase-like (PK-like) 47 312 IPR011009 -
Sebi16g00173 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 180 192 IPR008271 GO:0004672|GO:0006468
Sebi16g00173 354 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 52 315 - -
Sebi16g00173 354 SMART serkin_6 58 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi16g00173 354 PRINTS Tyrosine kinase catalytic domain signature 283 305 IPR001245 GO:0004672|GO:0006468
Sebi16g00173 354 PRINTS Tyrosine kinase catalytic domain signature 174 192 IPR001245 GO:0004672|GO:0006468
Sebi16g00173 354 PRINTS Tyrosine kinase catalytic domain signature 220 230 IPR001245 GO:0004672|GO:0006468
Sebi16g00173 354 PRINTS Tyrosine kinase catalytic domain signature 136 149 IPR001245 GO:0004672|GO:0006468
Sebi16g00173 354 PRINTS Tyrosine kinase catalytic domain signature 239 261 IPR001245 GO:0004672|GO:0006468
Sebi16g00173 354 Pfam Protein tyrosine and serine/threonine kinase 60 312 IPR001245 GO:0004672|GO:0006468
Sebi16g00173 354 Gene3D Transferase(Phosphotransferase) domain 1 141 342 - -
Sebi16g00173 354 CDD STKc_MAP3K-like 65 312 - -
Sebi16g00173 354 Gene3D Phosphorylase Kinase; domain 1 47 139 - -
Sebi16g00173 354 FunFam Serine/threonine-protein kinase isoform 1 48 140 - -
Sebi16g00173 354 ProSiteProfiles Protein kinase domain profile. 58 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi16g00173 Sebi-Chr16 2801737 2805019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi16g00173 31 321 MAP Kinase Kinase Kinase AT1G62400 64.068 3.77e-136 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Sebi16g00173 PK_Tyr_Ser-Thr 4.2e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi16g00173 - - gmx:100785212 645.195