Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi16g00166 ATGAAGGAAAGCAGTGATGGGTTTGTGAGGGCAGATCAGATTGATCTGAAGAGCATAGATGAACAACTGGAGAGACACCTCAACAAGGTGTTGACCATAGAAAAGAAAAAGCGCACAGAAGAAGAAGATGCTGATCATCATCATGTTCATGTTCACACTGGTTCTCCCACTGCTATGAAGTTCAAAACTGCTGTTGGTGGGGTTAGCTTCAAGAAGCAAAAGCAAGAGTGGGAAATTGATCCTTCCAAACTAATCATCAAGAGTGTTATTGCTCGTGGCACTTTTGGCACTGTCCATCGTGGTATCTATGATGCCCAAGATGTTGCTGTTAAATTGCTGGACTGGGGAGAAGAAGGCCAAAGGACAGAAGCTGAAGTTGCTTCTCTGAGGGCAGCGTTTATACAGGAAGTTGCTGTTTGGCATAAACTTGATCATCCCAATGTCACAAAGTTTATAGGGGCGACAATGGGGTCTGCAGAATTGCAGATACAAACTGATAATGGCCTAATTAGCATGCCAAGCAATGTCTGTTGTGTTGTTGTGGAGTATCTTGCAGGAGGTACACTGAAGTCATACCTAATAAAGAACAGGAGGAGGAAGTTAGCTTTTAAGGTTGTCATCCAGTTGGCACTTGATCTTGCAAGAGGGTTGAGCTATCTTCACTCTCAGAAGATTGTCCATAGAGATGTAAAGACAGAGAACATGCTGTTGGATAAGACACGCACAGTTAAAATTGCTGATTTTGGTGTTGCGCGTGTTGAGGCATCAAATCCTAATGATATGACAGGGGAGACTGGTACTCTTGGTTATATGGCTCCAGAGGTTTTAAATGGCAACCCCTATAACAGGAAATGTGATGTGTACAGTTTTGGTATCTGTTTATGGGAGACATATTGTTGTGACATGCCATATCCTGACCTAAGTTTCTCAGAAATCACTTCAGCCGTTGTTCGCCAGAATTTGAGACCAGAAATACCAAGATGTTGCCCAAGTTCTCTAGCAAATGTAATGAAGAAATGCTGGGATGCGAGCCCCGATAAGCGGCCAGAGATGGATGAGGTAGTTTCCATGCTGGAAGCCATTGACACATCCAAAGGTGGAGGGATGATCCCTTATGATCAGCAGCAGGGTTGTCTTTGCTTCCGCAAGCATAGAGGGCCTTGA 1164 0.4407 MKESSDGFVRADQIDLKSIDEQLERHLNKVLTIEKKKRTEEEDADHHHVHVHTGSPTAMKFKTAVGGVSFKKQKQEWEIDPSKLIIKSVIARGTFGTVHRGIYDAQDVAVKLLDWGEEGQRTEAEVASLRAAFIQEVAVWHKLDHPNVTKFIGATMGSAELQIQTDNGLISMPSNVCCVVVEYLAGGTLKSYLIKNRRRKLAFKVVIQLALDLARGLSYLHSQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWETYCCDMPYPDLSFSEITSAVVRQNLRPEIPRCCPSSLANVMKKCWDASPDKRPEMDEVVSMLEAIDTSKGGGMIPYDQQQGCLCFRKHRGP 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi16g00166 387 Gene3D Transferase(Phosphotransferase) domain 1 185 376 - -
Sebi16g00166 387 CDD STKc_MAP3K-like 90 358 - -
Sebi16g00166 387 SUPERFAMILY Protein kinase-like (PK-like) 69 358 IPR011009 -
Sebi16g00166 387 Coils Coil 16 36 - -
Sebi16g00166 387 Pfam Protein tyrosine and serine/threonine kinase 86 358 IPR001245 GO:0004672|GO:0006468
Sebi16g00166 387 FunFam Kinase suppressor of Ras 1 73 168 - -
Sebi16g00166 387 FunFam Serine/threonine-protein kinase HT1 184 369 - -
Sebi16g00166 387 Gene3D Phosphorylase Kinase; domain 1 72 167 - -
Sebi16g00166 387 PRINTS Tyrosine kinase catalytic domain signature 219 237 IPR001245 GO:0004672|GO:0006468
Sebi16g00166 387 PRINTS Tyrosine kinase catalytic domain signature 181 194 IPR001245 GO:0004672|GO:0006468
Sebi16g00166 387 PRINTS Tyrosine kinase catalytic domain signature 285 307 IPR001245 GO:0004672|GO:0006468
Sebi16g00166 387 PRINTS Tyrosine kinase catalytic domain signature 329 351 IPR001245 GO:0004672|GO:0006468
Sebi16g00166 387 SMART serkin_6 84 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi16g00166 387 ProSiteProfiles Protein kinase domain profile. 84 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi16g00166 387 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 64 361 - -
Sebi16g00166 387 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi16g00166 Sebi-Chr16 2607826 2612353 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi16g00166 1 319 MAP Kinase Kinase Kinase AT5G50000 79.751 0.0 536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Sebi16g00166 PK_Tyr_Ser-Thr 9.9e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi16g00166 - - gmx:100807921 717.227