Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi16g00164 ATGCTAACGAAATCTCAAAACGTTGCGTCGCAATTCCGTGCTCTCATTCGTGCGGTTGCCACAGCGCTTGACGTTTTGCCTCTGCATAAGGTGGATGTGTGTGAGGAAGTGAAGGAGTTAGTTGAGTTAGTTGCGAAGCAAGCGAGGAAAGCCAAGTTCGATGTGGACCCCAACGACGAGCGTGCAAGCAGACGAGTTCATTCCGTTTTGCGTCAATTCGAAAAAGGAACCGAACCGGACGTAACCGCATTGCAGGGAATCCTCAACTACCTTGAAATCAAGAACTGGAGCGATTGCAACAGAGAAATCGAATTCTTAGAAGAAGAAATCAGTTTGGAGTATCGTGATTGCAAAGAGCGAGAGGCTCCACTTTTGAGTAGCTTGGTTGGATTCTTGACCTACTGCAGGGTAGTCATATTCGAAAAACTGAACTATGACTTTCCATTTCCCTCACGAAACTCTGATCAATCAGAAGCTAGGCACAGCACAGAGATGATAACTTGCGTGAATCCAGAGGATTTCCGGTGTCCGATTTCTCTTGAACTGATGACAGATCCGGTGACGGTTTCAACAGGCCAGACCTACGATCGCGCCTCAATTCAAAAATGGCTCAAAGCTGGAAACAAGATATGTCCTAAAACAGGGGAGAATCTAACAAACACAGAGTTGGTACCAAACACGACGCTCAAGAGGCTAATCCAACAGTTCTGTTCTGACAACGGCATTTCCCTTGCGAAATCATGTAACCGTAGCCGTGACATAGCGAGGACAATCGTTGCGGGTAGTTCAGCAGCAGCACATGCTATGCAGTTCCTTTCGTGGTTTCTCACGCGCAGGCTCGTGTTTGGAACTGAAGAACAGAAGAACAAAGCTGCTTATGAGATTCGCGTGCTTGCTAGGTCCAGCATTTTTAACAGAGCGTGCTTGATTGAAGTTGGCACTGTGCCGCCACTGTTAGATCTTTTAACCACTGATGATATTGATAGATCCACGCAAGAGAATGCGATCTCTGCTTTATTTAAGCTTTCAAAGCACGCAAGTGGTCCTGAAAATATCATGGAAAGTGGAGGTTTAAACCCCATTCTCTATGTACTCAAAAACGGACTTAGCCTTGAAGCTCGCCAAATTGCAGCTGCTACGGTTTTTTACCTTTCTTCGGTGAAGGAGTACAGGAAATTAATAGGGGAAAACCCAGAGGCAATTCCAGCTTTGGTGGAGTTAATAAAGGGAGGAACAACCTGTGGGAAAAAGAATGCTGTGGTTGCGATTTTCGGGCTTCTTTTGCTTCCTAGGAATCATCAAAGGGTGCTTGAGGCGGGTGCTGTTCCTGTGCTTGTTGATGTTTTGGCTACATGTGATAAAGATGAACTTGTCACTGAATGTTTAGCTGTTCTTGCAGCACTGGCTGAAAATGTGGATGGAGCACATGCTGTGTTACAACAAGCATCTGCGTTGGCTTTGATCGTTGGGATGTTGCGATCTGCCACGTCACGTGCAGGGAAAGAACACTCTGCTTCTATCTTGCTGTCACTCTGTGTCAATGTGGGTGCTGAGGTTGTGGCTGTTCTTGCTAAGGATTCTTCGCTGATGCCTGTGCTTTATTCGCTTATTACGGATGGTACTCATCAAGCTGCAAAGAAAGCACGATTCCTCATCAAAGTTCTACAAGATTTCAATGAAACAAGAACTTCTGGATTGAAACGAGACAAGTGA 1713 0.4577 MLTKSQNVASQFRALIRAVATALDVLPLHKVDVCEEVKELVELVAKQARKAKFDVDPNDERASRRVHSVLRQFEKGTEPDVTALQGILNYLEIKNWSDCNREIEFLEEEISLEYRDCKEREAPLLSSLVGFLTYCRVVIFEKLNYDFPFPSRNSDQSEARHSTEMITCVNPEDFRCPISLELMTDPVTVSTGQTYDRASIQKWLKAGNKICPKTGENLTNTELVPNTTLKRLIQQFCSDNGISLAKSCNRSRDIARTIVAGSSAAAHAMQFLSWFLTRRLVFGTEEQKNKAAYEIRVLARSSIFNRACLIEVGTVPPLLDLLTTDDIDRSTQENAISALFKLSKHASGPENIMESGGLNPILYVLKNGLSLEARQIAAATVFYLSSVKEYRKLIGENPEAIPALVELIKGGTTCGKKNAVVAIFGLLLLPRNHQRVLEAGAVPVLVDVLATCDKDELVTECLAVLAALAENVDGAHAVLQQASALALIVGMLRSATSRAGKEHSASILLSLCVNVGAEVVAVLAKDSSLMPVLYSLITDGTHQAAKKARFLIKVLQDFNETRTSGLKRDK 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi16g00164 570 CDD RING-Ubox_PUB 171 223 IPR045210 -
Sebi16g00164 570 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 168 236 IPR013083 -
Sebi16g00164 570 Pfam U-box domain 171 240 IPR003613 GO:0004842|GO:0016567
Sebi16g00164 570 SUPERFAMILY ARM repeat 279 555 IPR016024 -
Sebi16g00164 570 PANTHER U BOX DOMAIN-CONTAINING 2 555 - -
Sebi16g00164 570 ProSiteProfiles U-box domain profile. 169 243 IPR003613 GO:0004842|GO:0016567
Sebi16g00164 570 SMART Ubox_2 173 236 IPR003613 GO:0004842|GO:0016567
Sebi16g00164 570 FunFam RING-type E3 ubiquitin transferase 250 566 - -
Sebi16g00164 570 SUPERFAMILY RING/U-box 162 243 - -
Sebi16g00164 570 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 313 357 IPR000225 GO:0005515
Sebi16g00164 570 Pfam Armadillo/beta-catenin-like repeat 305 343 IPR000225 GO:0005515
Sebi16g00164 570 SMART arm_5 429 470 IPR000225 GO:0005515
Sebi16g00164 570 SMART arm_5 301 344 IPR000225 GO:0005515
Sebi16g00164 570 SMART arm_5 345 386 IPR000225 GO:0005515
Sebi16g00164 570 FunFam RING-type E3 ubiquitin transferase 169 244 - -
Sebi16g00164 570 Gene3D - 237 563 IPR011989 -
Sebi16g00164 570 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 440 483 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi16g00164 Sebi-Chr16 2588822 2590534 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi16g00164 1 567 U-box Gene Family AT1G10560 40.625 8.48e-142 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi16g00164 - - tpra:123884536 797.349