Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi16g00139 ATGCCAATGGTAAAATCAAATACACCTGATCCTGAATCACAAAACCCTGAATGTGATTCACGTACTCAGCAGTCTTCATTGATGGCACAATGGTCATTTCAGCAGAGGTACCAAGTGTGGCCCAAAGACGTCATCAGCACTACCCAGAAATGTAAAGTATGTGAAAAGAAAGTCTACTGGGTGGAACAGCTCACTGCTGACAACAAGGTGTACCACAAGTCTTGCTTCAGATGTCACCACTGCAAGGGCACCCTCAAGCTGAGTAATTATTGTTCTTTTGAGGGTGTTCTATACTGTAAGCCTCATTATGACCAACTCTTTAAGATGACTGGAAGTTTGGACAAAAGTTTTGAAGGTATTCCAAGAATTGCTAGAGTAGAAAGATCTGCTGATCAGGTCCAAATCAACAGCAAGATCTCAAGATTATTTGCTGGAACTCAAGAAAAGTGTGTTGGTTGCAAGAAAACAGTGTACCCAATTGAAAAGGTGGGTGTTGATGGCAAATCTTACCATAAGTCATGCTTCAGGTGCACCCATGGAGGTTGTGTAATCAGCCCATCAAATTATGTGGCCCATGAACATCGTCTTTATTGTAGACACCACCATACTCAGCTCTTCAAGCAGAAGGGTAACTTTAGTCAATTTGACAAGCATGAAAATGGTCACGTGATCACTGAGACTGAGAACACAACATCCGAGTAA 702 0.4202 MPMVKSNTPDPESQNPECDSRTQQSSLMAQWSFQQRYQVWPKDVISTTQKCKVCEKKVYWVEQLTADNKVYHKSCFRCHHCKGTLKLSNYCSFEGVLYCKPHYDQLFKMTGSLDKSFEGIPRIARVERSADQVQINSKISRLFAGTQEKCVGCKKTVYPIEKVGVDGKSYHKSCFRCTHGGCVISPSNYVAHEHRLYCRHHHTQLFKQKGNFSQFDKHENGHVITETENTTSE 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi16g00139 233 MobiDBLite consensus disorder prediction 1 20 - -
Sebi16g00139 233 PANTHER OS06G0237300 PROTEIN 31 133 - -
Sebi16g00139 233 FunFam LIM domain and actin-binding 1 45 115 - -
Sebi16g00139 233 ProSiteProfiles LIM domain profile. 148 208 IPR001781 -
Sebi16g00139 233 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 77 117 - -
Sebi16g00139 233 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 46 76 - -
Sebi16g00139 233 ProSitePatterns LIM zinc-binding domain signature. 51 85 IPR001781 -
Sebi16g00139 233 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 142 175 - -
Sebi16g00139 233 SMART lim_4 149 201 IPR001781 -
Sebi16g00139 233 SMART lim_4 50 102 IPR001781 -
Sebi16g00139 233 FunFam LIM domain and actin-binding 1 144 214 - -
Sebi16g00139 233 Pfam LIM domain 150 205 IPR001781 -
Sebi16g00139 233 Pfam LIM domain 51 105 IPR001781 -
Sebi16g00139 233 ProSiteProfiles LIM domain profile. 49 109 IPR001781 -
Sebi16g00139 233 Gene3D Cysteine Rich Protein 144 214 - -
Sebi16g00139 233 Gene3D Cysteine Rich Protein 45 115 - -
Sebi16g00139 233 CDD LIM2_SF3 150 210 - -
Sebi16g00139 233 CDD LIM1_SF3 47 108 - -
Sebi16g00139 233 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 176 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi16g00139 Sebi-Chr16 2246133 2249879 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Sebi16g00139 LIM 5.8e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi16g00139 K09377 - gmx:100792627 366.696