Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi16g00117 ATGGTGTCCACATCTGAGAAGAAGAAAACCCTTCACTCCCTCATCGCTTCAAACCTCACTAAGCTCACTATTCCTTCTTCTTCCACCAACGATCCTAACCCATCTCCTTCCACTGCCAGCCCCCACGTCATCCACAGTAGGTCCCACTCCTTCGTAGGTCCATCCCCGCGCTTCCCCCCTCCCTCTTCCTCTTCCCTCTTCTTTCTCGACGAAGAATTCCCTTCTCACAGCAGCGACGAAGATGAACCCGAACCAAAAAAGCAAGAGAAGAAAGTGGTCCCCAAAATTGGCCCCGCGGATTTCCAGATTCTGAGAGTTGTAGGGCAGGGTGCCTTTGGTAAGGTCTTTCTGGTTAAAAAAAAGGGCGATTGTTCAAACGGTGACGGTGTCTTCGCCATGAAGGTCATGAGGAAGGACACCATCATCAAAAAGAATCACGTTGATTATATGAAAGCTGAAAGAGATATTCTCACTAAAGTGCTTCATCCTTTCATTGTTCAGCTCCGCTACTCTTTCCAAACCAAATCAAAGTTATATTTGATTTTGGACTTTATAAATGGAGGGCATCTCTTCTTTCACTTATACCGGCAGGGAATTTTCAGTGAGGATCAGGCAAGGATTTACACTGCTGAGATAGTATCTGCTGTTTCACATCTTCACAAGAACGGCATCGTGCATCGGGATCTTAAACCTGAAAACATACTTATGGATGCTGATGGCCATGTGATGCTAACTGATTTTGGACTGTCAAAGGAAATTGATGAATTGGGCAGATCCAACTCTTTGTGTGGGACCACCGAATATATGGCTCCAGAAATCCTTCTTGGTAAAGGCCATAACAAGGATGCAGATTGGTGGAGTGTCGGTGTTCTGTTGTATGAAATGCTAACAGGGAAGGCACCATTTACACACACTAACAGAAAGAAGCTTCAGGAGAAAATTATTAAAGAGAAAGTTAAACTTCCACCACACCTTACCACTGAAGCTCACTCTTTGCTGAAAGGATTACTGCAAAAGGATCCATCGACAAGGTTAGGCAATGGGCCAAATGGAGAAGACCAGATCAAGAATCATAAATGGTTTCGGTCAATCAATTGGAGAAAATTGGAGGCAAGAGAACTGGAACCAAAGTTTAAACCAGATGTGTCTGGAAAAGAGTGTACAGCTAATTTTGACCAATGCTGGACAGCAATGCCTCCTGATGACTCACCAGCACCCTCTCCTACAGCAGGTGACCATTTCAAGGGCTATACTTATGTGGCACCAAACCCTTGGCTTTCCTCTGGATAG 1290 0.4488 MVSTSEKKKTLHSLIASNLTKLTIPSSSTNDPNPSPSTASPHVIHSRSHSFVGPSPRFPPPSSSSLFFLDEEFPSHSSDEDEPEPKKQEKKVVPKIGPADFQILRVVGQGAFGKVFLVKKKGDCSNGDGVFAMKVMRKDTIIKKNHVDYMKAERDILTKVLHPFIVQLRYSFQTKSKLYLILDFINGGHLFFHLYRQGIFSEDQARIYTAEIVSAVSHLHKNGIVHRDLKPENILMDADGHVMLTDFGLSKEIDELGRSNSLCGTTEYMAPEILLGKGHNKDADWWSVGVLLYEMLTGKAPFTHTNRKKLQEKIIKEKVKLPPHLTTEAHSLLKGLLQKDPSTRLGNGPNGEDQIKNHKWFRSINWRKLEARELEPKFKPDVSGKECTANFDQCWTAMPPDDSPAPSPTAGDHFKGYTYVAPNPWLSSG 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi16g00117 429 SMART pkinase_C_6 362 421 IPR000961 GO:0004674|GO:0005524|GO:0006468
Sebi16g00117 429 MobiDBLite consensus disorder prediction 20 67 - -
Sebi16g00117 429 FunFam Non-specific serine/threonine protein kinase 99 209 - -
Sebi16g00117 429 ProSitePatterns Protein kinases ATP-binding region signature. 107 134 IPR017441 GO:0005524
Sebi16g00117 429 Pfam Protein kinase C terminal domain 382 419 IPR017892 GO:0004674|GO:0005524|GO:0006468
Sebi16g00117 429 FunFam Non-specific serine/threonine protein kinase 185 380 - -
Sebi16g00117 429 MobiDBLite consensus disorder prediction 20 45 - -
Sebi16g00117 429 SUPERFAMILY Protein kinase-like (PK-like) 91 406 IPR011009 -
Sebi16g00117 429 Gene3D Transferase(Phosphotransferase) domain 1 185 380 - -
Sebi16g00117 429 PANTHER RIBOSOMAL PROTEIN S6 KINASE 51 423 - -
Sebi16g00117 429 Pfam Protein kinase domain 101 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi16g00117 429 ProSiteProfiles Protein kinase domain profile. 101 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi16g00117 429 ProSiteProfiles AGC-kinase C-terminal domain profile. 362 429 IPR000961 GO:0004674|GO:0005524|GO:0006468
Sebi16g00117 429 CDD STKc_AGC 107 361 IPR045270 GO:0004674|GO:0005524
Sebi16g00117 429 MobiDBLite consensus disorder prediction 73 92 - -
Sebi16g00117 429 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Sebi16g00117 429 Gene3D Phosphorylase Kinase; domain 1 99 403 - -
Sebi16g00117 429 SMART serkin_6 101 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi16g00117 Sebi-Chr16 1823381 1827383 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi16g00117 41 422 AGC Kinase Gene Family AT3G08720 61.097 1.01e-175 498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC-Pl Sebi16g00117 Pkinase 3.4e-72 CL0016