Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi16g00112 ATGGAACCTCCTCTCATCAACGACTCCACATTCTCCTCTGCTAACCCTTCTTTGTCTGAGATTTGGCCTATCCATTTCCCTCTTGACTCTCACAACAACCTCACTCCTCTTCGCAGGAAAAGAAACAACAACGACCCTCCCAATCCCAACCACTCGAGTGATTGTGGCAATAAACATATGAAGCTAGGAGGAGGATCCGTGGAGGACGAAAACGGTGCGTTCAAAGCGGAAGGAGATGCAACTTCAGTAGCCGGTAACAAGTTACCTGAACAACAAAGTGGTAAACCTTCTGAACAGCCACCTAAGCAAGACTATATACACGTGAGAGCCAGAAGAGGCCAAGCTACCGATAGTCACAGTCTTGCTGAGAGAGCAAGAAGAGAAAAGATCAGTGAGAGGATGAAAATTCTTCAAGATTTAGTCCCTGGTTGTAACAAGGTAATTGGTAAAGCACTTGTCCTGGATGAGATAATAAATTACATCCAGTCACTGCAGCGTCAGGTTGAGTTCCTTTCGATGAAGCTTGAAGCAGTTAATTCGAGATTGACCATGAACCCTACTATTGAATGTTTTCCATCAAAAGATGTTGTTACTCAGCCATTTGACCTTGCTGGAATAATATTTGGATCACAAGCAAGCAGGGGGTATGCTCAGGGATCACAACCTGGATGGCTGCATATGCAGATAGCTGGTGGTTTTGATAAAGCAACATGA 714 0.4454 MEPPLINDSTFSSANPSLSEIWPIHFPLDSHNNLTPLRRKRNNNDPPNPNHSSDCGNKHMKLGGGSVEDENGAFKAEGDATSVAGNKLPEQQSGKPSEQPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLTMNPTIECFPSKDVVTQPFDLAGIIFGSQASRGYAQGSQPGWLHMQIAGGFDKAT 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi16g00112 237 FunFam Basic helix-loop-helix transcription factor 111 184 - -
Sebi16g00112 237 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 114 164 IPR011598 GO:0046983
Sebi16g00112 237 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 60 207 IPR024097 GO:0006355
Sebi16g00112 237 Pfam Helix-loop-helix DNA-binding domain 118 165 IPR011598 GO:0046983
Sebi16g00112 237 Gene3D - 111 188 IPR036638 GO:0046983
Sebi16g00112 237 MobiDBLite consensus disorder prediction 37 55 - -
Sebi16g00112 237 MobiDBLite consensus disorder prediction 26 74 - -
Sebi16g00112 237 Coils Coil 161 181 - -
Sebi16g00112 237 CDD bHLH_AtBPE_like 104 187 - -
Sebi16g00112 237 SMART finulus 120 170 IPR011598 GO:0046983
Sebi16g00112 237 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 112 184 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi16g00112 Sebi-Chr16 1779032 1781650 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi16g00112 1 237 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 47.038 1.68e-73 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi16g00112 HLH 1.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi16g00112 - - gmx:100799646 361.688