Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi16g00108 ATGTGGAAGTGCAGTTTTATTCAAAAAAAGGTTTCTCCAAAGGTCCCTAGTGGTAGCTACAATATTGCCCAGGTCAGCTATGAGTTGAGTGTCCTCGGTACTAGAGGGCCATGGAGGATGAATTGCACGATGTACTCAATCCCTGCATCAGCCCTTGAGCCTGGTGGCGATGTCCTCAGGTAA 183 0.4809 MWKCSFIQKKVSPKVPSGSYNIAQVSYELSVLGTRGPWRMNCTMYSIPASALEPGGDVLR 60
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi16g00108 60 Pfam Tub family 6 53 IPR000007 -
Sebi16g00108 60 Gene3D Tubby Protein; Chain A 3 57 IPR025659 -
Sebi16g00108 60 SUPERFAMILY Tubby C-terminal domain-like 9 56 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi16g00108 Sebi-Chr16 1713205 1713462 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi16g00108 5 58 TUB Transcription Factor Family AT1G43640 79.630 1.76e-24 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Sebi16g00108 Tub 2.9e-12 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi16g00108 K19600 - cit:102613939 94.3597