Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi16g00103 ATGGGGAACTGCAACGCGTGCGTGAGAGCAGATGTGATAGAGTCAAACCGGTCTAACGAGTCGAACCGGGGGAGAAAGAGGAAAAACCAAACCGAATCCATTCTCAGAGGAAGGAGTCGGTTCGGGTGCTACGATCCAGGTTCTGAAGGAGACAGGGAAACGAAGCAGGAACTTGCGTGCAAGTCGATCTCGAAGCGGAAGCTGAGGACGGCGGTGGATGTGGAAGACGTGCGGCGAGAGGTGGCGATTATGTCGACGCTACCGGACCATCCTAATGTGGTGAAGCTGAAAGCAACGTATGAGGATGATGAGAATGTTCACCTTGTAATGGAGCTTTGTGGTGGTGGCGAGCTTTTTGATAGGATCGTTGCTAGGGGACATTACAGTGAGCGTGCGGCGGCACACGTGGCAAGGACTATTGCGGAGGTTGTGAGAATGTGTCATATCAATGGTGTCATGCATAGAGACCTTAAGCCTGAGAATTTCCTCTTTGCTAATAAGAAAGAGAATTCTGTTCTTAAGGCCATTGACTTTGGCCTCTCTGTGTTTTTCAAGCCTGGGGAGAGATTTTCAGAGATTGTTGGGAGTCCTTACTATATGGCACCAGAGGTTTTGAAGAGGAATTATGGACCTGAAGTTGATGTGTGGAGTGCTGGGGTGATTCTTTATATTTTGTTATGTGGGGTGCCTCCGTTTTGGGCAGAGACGGAACAAGGGGTTGCTTTGGCGATTTTGAGAGGGGTTATTGACTTCAAGAGGGAGCCTTGGCCTCAGATTTCAGACAGTGCTAAGAGCCTAGTGCGGCAGATGTTGGAACCAGATCCTAAGAAGCGCTTGACGGCTGAACAGGTGCTTGAACACCCCTGGCTACAAAATGCGAAGAAAGCTTCAAATGTACCATTAGGAGATATTGTGAGGACACGGCTTAAGCAGTTCTCTGTGATGAATAGATTCAAAAAGAAAGCTCTTCGGGTAATTGCAGAACATTTATCTGTTGAAGAGGTAGAAATAATCAGAGATATGTTTACACTAATGGATACTGACAAAGATGGCAAAGTAACATATGATGAACTAAAGGCCGGTTTGCGGAAAGTTGGTTCACAATTGGCTGAGCCAGAGATAAAGTTGCTGATGGATGTGGCTGATGTGGATGGGAATGGAGTACTTGACTATGGAGAGTTTGTAGCCGTGACAATTCACTTGCAAAGAATGGAGAATGATGAGCACTTCCGCAAAGCATTCATGTTTTTTGACAAAGATGGGAGTGGGTATATTGAGTTAGGTGAGCTAGAGGAAGCATTAGCAGATGAGTCAGGAGGAATTGAAACTGATGTTCTGAACGAGATCATGCGTGAAGTTGACACTGACAAGGATGGTTGTATCAGTTATGAGGAGTTTGTGGCCATGATGAAAACTGGAACTGACTGGAGAAAAGCATCTAGGCAGTATTCAAGGGAGAGATTCAAGAGCTTGAGCATAAATTTGATGAAGGACGGCTCACTTCAGCTTCATGATGCGATTAGTGGTCAAGCTGTTATGGTTTAA 1545 0.4602 MGNCNACVRADVIESNRSNESNRGRKRKNQTESILRGRSRFGCYDPGSEGDRETKQELACKSISKRKLRTAVDVEDVRREVAIMSTLPDHPNVVKLKATYEDDENVHLVMELCGGGELFDRIVARGHYSERAAAHVARTIAEVVRMCHINGVMHRDLKPENFLFANKKENSVLKAIDFGLSVFFKPGERFSEIVGSPYYMAPEVLKRNYGPEVDVWSAGVILYILLCGVPPFWAETEQGVALAILRGVIDFKREPWPQISDSAKSLVRQMLEPDPKKRLTAEQVLEHPWLQNAKKASNVPLGDIVRTRLKQFSVMNRFKKKALRVIAEHLSVEEVEIIRDMFTLMDTDKDGKVTYDELKAGLRKVGSQLAEPEIKLLMDVADVDGNGVLDYGEFVAVTIHLQRMENDEHFRKAFMFFDKDGSGYIELGELEEALADESGGIETDVLNEIMREVDTDKDGCISYEEFVAMMKTGTDWRKASRQYSRERFKSLSINLMKDGSLQLHDAISGQAVMV 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi16g00103 514 SMART serkin_6 41 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi16g00103 514 Gene3D Phosphorylase Kinase; domain 1 38 117 - -
Sebi16g00103 514 ProSiteProfiles EF-hand calcium-binding domain profile. 333 368 IPR002048 GO:0005509
Sebi16g00103 514 ProSiteProfiles EF-hand calcium-binding domain profile. 369 404 IPR002048 GO:0005509
Sebi16g00103 514 ProSitePatterns EF-hand calcium-binding domain. 418 430 IPR018247 -
Sebi16g00103 514 Gene3D Transferase(Phosphotransferase) domain 1 118 298 - -
Sebi16g00103 514 CDD EFh 409 471 IPR002048 GO:0005509
Sebi16g00103 514 ProSiteProfiles Protein kinase domain profile. 30 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi16g00103 514 ProSitePatterns EF-hand calcium-binding domain. 454 466 IPR018247 -
Sebi16g00103 514 PANTHER SERINE/THREONINE-PROTEIN KINASE 36 466 - -
Sebi16g00103 514 SUPERFAMILY Protein kinase-like (PK-like) 51 298 IPR011009 -
Sebi16g00103 514 ProSitePatterns EF-hand calcium-binding domain. 346 358 IPR018247 -
Sebi16g00103 514 Pfam EF-hand domain pair 338 397 IPR002048 GO:0005509
Sebi16g00103 514 Pfam EF-hand domain pair 408 471 IPR002048 GO:0005509
Sebi16g00103 514 SUPERFAMILY EF-hand 318 497 IPR011992 -
Sebi16g00103 514 SMART efh_1 337 365 IPR002048 GO:0005509
Sebi16g00103 514 SMART efh_1 409 437 IPR002048 GO:0005509
Sebi16g00103 514 SMART efh_1 445 473 IPR002048 GO:0005509
Sebi16g00103 514 SMART efh_1 373 401 IPR002048 GO:0005509
Sebi16g00103 514 ProSiteProfiles EF-hand calcium-binding domain profile. 405 440 IPR002048 GO:0005509
Sebi16g00103 514 CDD STKc_CAMK 51 289 - -
Sebi16g00103 514 Gene3D - 299 474 - -
Sebi16g00103 514 FunFam Calcium-dependent protein kinase 7 299 474 - -
Sebi16g00103 514 FunFam calcium-dependent protein kinase 13 118 298 - -
Sebi16g00103 514 ProSiteProfiles EF-hand calcium-binding domain profile. 441 476 IPR002048 GO:0005509
Sebi16g00103 514 Pfam Protein kinase domain 51 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi16g00103 514 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Sebi16g00103 514 ProSitePatterns EF-hand calcium-binding domain. 382 394 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi16g00103 Sebi-Chr16 1557112 1561226 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi16g00103 1 514 EF-hand Containing Proteins AT1G74740 76.427 0.0 840
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Sebi16g00103 Pkinase 4.2e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi16g00103 K13412 - gmx:100809838 870.922