Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi16g00090 ATGGAAATGGGTACTGTGACATGGGTTTTCTTGGTGATTTTGACAACATTTTTATGCCCTTTCTCTCTTGCTCTCTCTCAAGACGGTCTGACATTGTTGGAAATCAAAAGCGCTTTGAATGACACTAAGAATGTTCTCAGCAACTGGCAAGAGTTTGATGAGTCTCCTTGTGCATGGACTGGTATCACTTGTCATCCTGAGGAACAAAAAAATCTGCCATACATGCAACTCGGTGGAATTATATCTCCCAGCATTGGTAAACTCAGTAGACTACAGAGACTGGCGCTTCATCAGAATGGCTTGCATGGAATTATTCCTAATGAAATTACCAATTGTACTGAGCTAAGAGCCCTGTACTTGAGGGCTAATTATTTCCAAGGAGGCATACCAGCAGCTATTGGAAACCTTTCATATTTAAATATACTGGATTTATCAAGCAACTCATTAAAAGGTGCTATACCTTCCTCTCTTGGTCGTCTCTCACATTTGCAAATTCTGAACTTGTCTACCAATTTCTTTTCTGGTGAAATCCCTGACATTGGAGTACTAAGCACCTTCCAGAAGAACTCGTTTATTGGCAATTTAGATCTTTGTGGGCGGCAAGTCCAAAAGCCATGTAGGACATCACTTGGTTTCCCTGTGGTGATACCACATGCTGAAAGTGATGAAGCTGCAGGCAAGTCAAATCTTTTCCCTACCAAAAGATCTTCACATTACATAAAATGGGTGTTAATTGGTGCAATGGCAACTATGGGCCTTGCACTTGTGATGATCCTTTCATTCCTCTGGATTCGTTTGTTATCAAAGAAGGAAAGAGTTGCTAGGAAATACACTGAAGTCAAGAAACAAGTTGATTCAGAAGCAAGCACAAAACTTATTACATTCCATGGTGATCTGCCATACACATCATCTGAGATCATAGAAAAGCTGGAGTCTCTTGATGAAGAGGATGTTGTAGGGTCAGGTGGATTTGGTACTGTTTACCGAATGGTGATGAATGATTGTGGTACATTTGCTGTTAAGAGGATTGACAGAAGTCGTGAAGGGTCTGATCAAGTGTTTGAAAGGGAACTAGAGATCTTGGGGAGCATCAAGCACATAAATTTAGTTAACCTGCGTGGTTACTGCAGGCTCCCTTCTTCAAGGCTCCTTATCTATGACTATTTGGCTATAGGCAGCTTAGAGGATCTCTTGCATGATGCCCATGTTACTACAGTGGTTGCTGGCACATTTGGCTATTTGGCACCGGAATATCTACAAAGTGGGAGAGCCACTGAGAAGTCAGATGTATATAGCTTTGGAGTCCTATTGCTGGAACTTGTAACTGGAAAGAGGCCTACAGATCCTTCCTTTGTGAAGAGAGGTTTAAATGTTGTTGGTTGGATGAACACATTACTGAGAGAAAACAGATTGGAAGATGTGGTAGACAAAAGATGCACTGATGCAGATGCAGGAACACTTGAAGTAATTCTTGAGCTAGCAGCTAGATGCAATGCAAATGCAGATGAACGTCCATCAATGAACCAAGTATTACAGTTGCTGGAACAAGAGGTTATGTCTCCTTGCCCAAGTGATTTTTATGAGTCTCAATCAGATCACTGTTGA 1605 0.4143 MEMGTVTWVFLVILTTFLCPFSLALSQDGLTLLEIKSALNDTKNVLSNWQEFDESPCAWTGITCHPEEQKNLPYMQLGGIISPSIGKLSRLQRLALHQNGLHGIIPNEITNCTELRALYLRANYFQGGIPAAIGNLSYLNILDLSSNSLKGAIPSSLGRLSHLQILNLSTNFFSGEIPDIGVLSTFQKNSFIGNLDLCGRQVQKPCRTSLGFPVVIPHAESDEAAGKSNLFPTKRSSHYIKWVLIGAMATMGLALVMILSFLWIRLLSKKERVARKYTEVKKQVDSEASTKLITFHGDLPYTSSEIIEKLESLDEEDVVGSGGFGTVYRMVMNDCGTFAVKRIDRSREGSDQVFERELEILGSIKHINLVNLRGYCRLPSSRLLIYDYLAIGSLEDLLHDAHVTTVVAGTFGYLAPEYLQSGRATEKSDVYSFGVLLLELVTGKRPTDPSFVKRGLNVVGWMNTLLRENRLEDVVDKRCTDADAGTLEVILELAARCNANADERPSMNQVLQLLEQEVMSPCPSDFYESQSDHC 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi16g00090 534 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Sebi16g00090 534 Pfam Protein kinase domain 315 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi16g00090 534 Pfam Protein kinase domain 404 512 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi16g00090 534 SUPERFAMILY Protein kinase-like (PK-like) 290 519 IPR011009 -
Sebi16g00090 534 ProSitePatterns Protein kinases ATP-binding region signature. 319 341 IPR017441 GO:0005524
Sebi16g00090 534 Pfam Leucine rich repeat 115 171 IPR001611 GO:0005515
Sebi16g00090 534 Gene3D Phosphorylase Kinase; domain 1 272 384 - -
Sebi16g00090 534 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 25 183 - -
Sebi16g00090 534 Gene3D Ribonuclease Inhibitor 25 208 IPR032675 -
Sebi16g00090 534 ProSiteProfiles Protein kinase domain profile. 313 534 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi16g00090 534 Gene3D Transferase(Phosphotransferase) domain 1 385 522 - -
Sebi16g00090 534 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 410 516 IPR046959 -
Sebi16g00090 534 SUPERFAMILY L domain-like 26 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi16g00090 Sebi-Chr16 1371894 1375516 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi16g00090 7 523 Receptor kinase-like Gene Family AT2G35620 38.136 8.30e-119 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Sebi16g00090 Pkinase 8.7e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi16g00090 - - gmx:100797653 697.582