Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi16g00088 ATGGCGGGTGGGAGGGTCTTTAGTAGTGCTAGTGGTGGTCCTGCAAATGTTTCAAATATGACTATTTTGCTTCACAATCAAACTCCTCGTGCCACTTCTCAACCTCTTGATTCTCTTTTCCTTTCTACATCCACTCCTTTCCTCGGTTCAAGATCTATGGTGAGCTTTGAAGATGTTCAAAGAGGGAAGGGGCATAATGGGTCGTTTTTCCGTGTATTTGATCTTGATGAGAATTATGATGATGGCATGGATGAGTACTTTCATCACACAGAGAAGAAGCGGCGTCTCTCTGTGGATCAAGTTCAGCTTCTTGAGAAAAGCTTTGAGGAAGAAAACAAGCTTGAACCTGAGAGGAAAACCAAGATAGCAAAGGATCTTGGTTTGCAACCACGGCAAGTTGCAATTTGGTTTCAGAACCGTAGAGCAAGGTGGAAGACCAAACAGCTTGAGAAAGATTATGAATCTCTTCATGCTAGCTATGAAAATCTCAAGTCCAACTATGACAACCTCCTCAAGGAGAAAGAAAATTTAAAAGCTGAGGTGGCAAGTCTAACTGAAAAGGTGCTTGCAAGAGAGAAACAAGGGGGAAACTTTAAACAACAGGGTGAAGGTGAAACAAGGAGTGACATTTTGGATTCTGATAGTCCACTTTACAATGATGGAGTTCACTCTACACTACTAGAGACAGGTGATTCTTCTTATGTATTTGAACCTGATCAATCAGACTTATCACAAGATGAAGAAGACAATCTCAGCAGGAGCTTTTTGCCTCCATACATATTTCCAAAACTTGAAGATATGGATTACTCCAACCCGCCTGAAAGTTCATGTAATTTTGGATTCCCAGAGGAAGATCATGCTCTTTGGTCCTGGTCTTACTAG 882 0.415 MAGGRVFSSASGGPANVSNMTILLHNQTPRATSQPLDSLFLSTSTPFLGSRSMVSFEDVQRGKGHNGSFFRVFDLDENYDDGMDEYFHHTEKKRRLSVDQVQLLEKSFEEENKLEPERKTKIAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYESLHASYENLKSNYDNLLKEKENLKAEVASLTEKVLAREKQGGNFKQQGEGETRSDILDSDSPLYNDGVHSTLLETGDSSYVFEPDQSDLSQDEEDNLSRSFLPPYIFPKLEDMDYSNPPESSCNFGFPEEDHALWSWSY 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi16g00088 293 CDD homeodomain 92 148 IPR001356 GO:0003677
Sebi16g00088 293 MobiDBLite consensus disorder prediction 230 249 - -
Sebi16g00088 293 Coils Coil 146 194 - -
Sebi16g00088 293 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 81 224 IPR045224 GO:0003700
Sebi16g00088 293 FunFam Homeobox-leucine zipper protein HAT5 85 149 - -
Sebi16g00088 293 Pfam Homeodomain 92 145 IPR001356 GO:0003677
Sebi16g00088 293 ProSiteProfiles 'Homeobox' domain profile. 87 147 IPR001356 GO:0003677
Sebi16g00088 293 PRINTS Lambda-repressor HTH signature 118 127 IPR000047 GO:0003677
Sebi16g00088 293 PRINTS Lambda-repressor HTH signature 127 143 IPR000047 GO:0003677
Sebi16g00088 293 SUPERFAMILY Homeodomain-like 78 149 IPR009057 -
Sebi16g00088 293 MobiDBLite consensus disorder prediction 193 215 - -
Sebi16g00088 293 ProSitePatterns 'Homeobox' domain signature. 122 145 IPR017970 GO:0000981|GO:0006355
Sebi16g00088 293 SMART HOX_1 90 151 IPR001356 GO:0003677
Sebi16g00088 293 Pfam Homeobox associated leucine zipper 147 188 IPR003106 GO:0006355|GO:0043565
Sebi16g00088 293 Gene3D - 95 141 - -
Sebi16g00088 293 Gene3D - 142 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi16g00088 Sebi-Chr16 1353307 1354825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi16g00088 39 291 Homeobox Transcription Factor Family AT3G01470 36.071 1.82e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sebi16g00088 Homeodomain 1.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi16g00088 - - cave:132174717 410.223