Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi16g00081 ATGGAAGCTAACAAGCTTAGATTGCTCTTCTTTTGTGTACTTTTTCTTGCTATATTCCCTACCCTCAGGGCTAATATGGCTCAATTTGACCAAATATGGCTGAAGCGATCTCAGGAAGCCAAAAAAGCAGCACAACAGGCTTTCAAGACAAACCCTGAAGAAGTAGCTGATGATTTCAATAAGCACGTCAACAAGGCTGTGAATGGCTTCAATAGCACGAGGAGGGCTTTAGCAAAATACAATGGTCCATGCAATGCCACAAATCCCATTGACAGTTGCTGGAGATGTGATGAAAACTGGGAAAAGAACCGCAAAAAGTTAGCAGATTGTGTTATTGGTTTTGGTCATGGCACAACAGGAGGCAAAGATGGCGAAATTTATGTTGTGGATGATCCATCTGATGATGACCTTGTGAGCCCAAAACCAGGGACTTTGCGACATGCTGTTATTCAAAAGGAGCCACTTTGGATCATTTTTAAAAAAAATATGTCCATCAAACTCAGAGCAGAGCTTCTACTAACTGATAATAAGACTATAGATGGACGTGGTGCAAACGTTCATATTAGTGATGGTGCTCAAATTACATTGCAATATGTGCAAAACATTATCATTCATGGACTGCACATCCATGATATCAAAAGAGCTAGTGGTGGCCTCATCAGAGACTCCATGAATCACTATGGATACCGTTCAATGAGTGATGGTGATGCAATTTCAATGTTTGGAGCTACTAATGTTTGGATAGATCATATTTCTATGTCCAATTGTGATGATGGCCTTGTAGATGCTGTAGAAGGATCAACAGCCATTACCATCTCCAACTGCCATATGACACATCATAATGATGTTATGTTATTCGGTGCGAGTGATACCTACTCAGGAGATAAACTCATGCAAATAACTCTGGCTTTCAACCATTTTGGACAAGGATTGGTGCAGAGGATGCCAAGGTGCAGATGGGGTTTCGTTCATGTTGTCAACAATGACTACACTCACTGGCTTATGTATGCCATTGGTGGGAGTCAACATCCCACCATCATCAGCCAGGGCAACCGATTTATTGCTCCAGAAAACCGAAATGCAAAAGAGGTGACAAAGAGGGATTATGCACCTGAAAGCGAGTGGAAGAAATGGGATTGGAGATCAGAAGATGACTTAATGATGAATGGAGCCTTCTTTGTTGAGTCTGGAAATAAGGTCACAAATGGTCCCAAGACAGGCATCACTGCAAAGCCTGGTTCATTTGCTGCAAGCCTCACTCGCTTTGCAGGTGCTCTAAAATGTGAACCAAACAAGGCATGCTGA 1305 0.4215 MEANKLRLLFFCVLFLAIFPTLRANMAQFDQIWLKRSQEAKKAAQQAFKTNPEEVADDFNKHVNKAVNGFNSTRRALAKYNGPCNATNPIDSCWRCDENWEKNRKKLADCVIGFGHGTTGGKDGEIYVVDDPSDDDLVSPKPGTLRHAVIQKEPLWIIFKKNMSIKLRAELLLTDNKTIDGRGANVHISDGAQITLQYVQNIIIHGLHIHDIKRASGGLIRDSMNHYGYRSMSDGDAISMFGATNVWIDHISMSNCDDGLVDAVEGSTAITISNCHMTHHNDVMLFGASDTYSGDKLMQITLAFNHFGQGLVQRMPRCRWGFVHVVNNDYTHWLMYAIGGSQHPTIISQGNRFIAPENRNAKEVTKRDYAPESEWKKWDWRSEDDLMMNGAFFVESGNKVTNGPKTGITAKPGSFAASLTRFAGALKCEPNKAC 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi16g00081 434 Pfam Pectate lyase 169 353 IPR002022 -
Sebi16g00081 434 Gene3D - 87 427 IPR012334 -
Sebi16g00081 434 PRINTS Pollen allergen Amb family signature 336 355 IPR018082 -
Sebi16g00081 434 PRINTS Pollen allergen Amb family signature 314 333 IPR018082 -
Sebi16g00081 434 PRINTS Pollen allergen Amb family signature 134 159 IPR018082 -
Sebi16g00081 434 PRINTS Pollen allergen Amb family signature 170 186 IPR018082 -
Sebi16g00081 434 PRINTS Pollen allergen Amb family signature 110 127 IPR018082 -
Sebi16g00081 434 PRINTS Pollen allergen Amb family signature 234 255 IPR018082 -
Sebi16g00081 434 PRINTS Pollen allergen Amb family signature 378 402 IPR018082 -
Sebi16g00081 434 PANTHER PECTATE LYASE 18-RELATED 40 432 IPR045032 GO:0030570
Sebi16g00081 434 SUPERFAMILY Pectin lyase-like 88 425 IPR011050 -
Sebi16g00081 434 Pfam Pectate lyase, N terminus 25 77 IPR007524 GO:0030570
Sebi16g00081 434 SMART amb_all 162 359 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi16g00081 Sebi-Chr16 1292501 1294511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi16g00081 1 434 Polysaccharide Lyase AT3G01270 56.421 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi16g00081 K01728 - gmx:100801864 683.715