Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi16g00076 ATGGAGTTTGCTTCAGGGAGATCTGGTGATGATGGAGGTAGTGAAGACCAGAAGAAAAGTGAGTATGGTGTTGGTGATAAACAAGACACTATTGTCGAGGAGCCACCTTTGGCTAATAACCAAAGATCCATGGTGGAGGCTGAACCAAGCACATCCTCTGCAGCAAAAAAGGAAGAGATTGATGATAAGCTTGATGCTACTAAAGCCGAAATGGGCGAGGTGAGAGAAGAAAATGAACGGTTAAAGATGTCCTTGAACAAAATAATGAATGAATATCGGACACTACAAATGCAATTTCACGATATGGTTAAGGAAGAAACAAAAAAGAATGATGATGATAACCAAGTCCATCAAGAGATAATAGAGGAATCGGATCTTGTTTCTCTCAGCCTTGGAAGAGTTCCAAGGAATGACGAGAAAGTAGTTAAAGTCTCTAAACCATTGAAGGATGAAGAGTTTAACCAAGACTTGACTCTTGGACTGGACTGTAAATTTGAAACATCAAAATCAGGGAGCACAACTGAAGCTTTGCCAAATCCAAGCCCTGTGAATAGTTCTCATGAAGTGCCAAAGGAAGAGGCTGGGGATGAGACTTGGCCACATACTAATAAGGCACTCAAGACAATGAGAGACACAGAGGATGAAGTTGCTCAGCAAACACCTGCTAAAAAAGCTAGAGTTTGCGTTAGAGCAAGATGTGATACCCCAACGATGAATGATGGATGCCAATGGAGGAAATATGGACAAAAGATTGCAAAGGGAAATCCTTGCCCTCGAGCTTACTATCGCTGTACAATTGCACCATCATGCCCAGTGCAGAGATGTGCTGAAGACACCTCCATTTTAATCACTACCTATGAAGGTACCCATAACCACAATCTTCCTCTTTCAGCCACTGCCATAGCTTCCACAACTTCTGCAGCTGCTTCCATGTTGTTATCTGGTTCATCAACCTCTCACTGTGGCTCAATGCCTTCAACAATTACAACAGCTAATAATAATCTCCATGGCCTGAACTTTTACCTATCAGATGGTTCCAAACCAAAGCAATTATACCCTGCACTCTCATCTTCATCTTCACATCCAACCATCACACTTGACCTCACTTCTTCAAATCCAACAACTTCCTCATCTCCCTTTGTCAGATTTACTTCAACCTACAACAACAACAACCAACCTAGATATCCTTCTTCCACAAGCCTGAGCTTCAATTCCTCAGATCAATCCAACACAAATTCTTGGAGCAATGGGATCCTCAACTATAGTACTCATCAACCATATAACAATAATAGAAACAATAATGTCCTTAACAGTTTAAACTTTGGAAGACCAACAATGGAAAATATCTACCAATCCTACATGCAAAGGAATAACAACAACAACTCAAACCCTCCTCATCAAGGTGCTTTACCAGACACTATATCTGCAGCAACAAAAGCAATCACAGCAGACCCAAGTTTTCAGTCAGCTTTGGCAACAATGCTTACTTCATTTATTGGGAGCACCCAAGGAAATCAAAGTGGTACTGTTGGAGAAATTTTGGGTCAAAAAATGAAATGGGCAGAGCTGTTTCCGGTGTCTTCTAGTTCTACAACCTTGCCTTCAACATCTAAAGTCAATGGTTATGGCTCAAGTTTATTGAACAAAACGCCTGTGAGTACACAAACGACAAGTTTGATGTTTCCACCGTCGTCTTTGCCATTTTCCACCTCCAAAACTGCATCTGGATCTCCTGGGGATAATAGTGACAACACCAATTAG 1761 0.4134 MEFASGRSGDDGGSEDQKKSEYGVGDKQDTIVEEPPLANNQRSMVEAEPSTSSAAKKEEIDDKLDATKAEMGEVREENERLKMSLNKIMNEYRTLQMQFHDMVKEETKKNDDDNQVHQEIIEESDLVSLSLGRVPRNDEKVVKVSKPLKDEEFNQDLTLGLDCKFETSKSGSTTEALPNPSPVNSSHEVPKEEAGDETWPHTNKALKTMRDTEDEVAQQTPAKKARVCVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTIAPSCPVQRCAEDTSILITTYEGTHNHNLPLSATAIASTTSAAASMLLSGSSTSHCGSMPSTITTANNNLHGLNFYLSDGSKPKQLYPALSSSSSHPTITLDLTSSNPTTSSSPFVRFTSTYNNNNQPRYPSSTSLSFNSSDQSNTNSWSNGILNYSTHQPYNNNRNNNVLNSLNFGRPTMENIYQSYMQRNNNNNSNPPHQGALPDTISAATKAITADPSFQSALATMLTSFIGSTQGNQSGTVGEILGQKMKWAELFPVSSSSTTLPSTSKVNGYGSSLLNKTPVSTQTTSLMFPPSSLPFSTSKTASGSPGDNSDNTN 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi16g00076 586 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 32 505 IPR044810 GO:0003700
Sebi16g00076 586 Gene3D WRKY domain 222 296 IPR036576 GO:0003700|GO:0006355|GO:0043565
Sebi16g00076 586 MobiDBLite consensus disorder prediction 9 28 - -
Sebi16g00076 586 Pfam WRKY DNA -binding domain 239 292 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sebi16g00076 586 MobiDBLite consensus disorder prediction 168 200 - -
Sebi16g00076 586 MobiDBLite consensus disorder prediction 52 77 - -
Sebi16g00076 586 MobiDBLite consensus disorder prediction 555 586 - -
Sebi16g00076 586 MobiDBLite consensus disorder prediction 168 186 - -
Sebi16g00076 586 Coils Coil 57 98 - -
Sebi16g00076 586 ProSiteProfiles WRKY domain profile. 233 295 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sebi16g00076 586 MobiDBLite consensus disorder prediction 384 407 - -
Sebi16g00076 586 MobiDBLite consensus disorder prediction 1 77 - -
Sebi16g00076 586 SMART WRKY_cls 238 294 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sebi16g00076 586 SUPERFAMILY WRKY DNA-binding domain 231 295 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi16g00076 Sebi-Chr16 1206466 1211072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi16g00076 71 566 WRKY Transcription Factor Family AT5G15130 37.818 1.24e-76 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Sebi16g00076 WRKY 4.6e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi16g00076 - - pvu:PHAVU_003G192000g 681.789