Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi16g00067 ATGGTCACCCCAAAACATATTGGCATGGTAATAACCCCATATGACTGGTTGTTCCCTACTGATGGAGAAGAGCATAATTATCATTATTGGAAGTATGCTTATGATGTAACAAAAGTTCCTCGTAGAAGCACCCATTTGTTAGCACATTCAGGTCTAACAGTGCATGGACACAGTGATGAAGGTAAACCTGTGATTCTCCCCACTCCAAGATCTGAAGGGGACATACTCTCATCCCCACATTTAAAAGCCTTCACATTTAATGATCTTAAGAATGCCTCTAGAAATTTCTGTCCTGATAATCTAATTGGACAAGGGGGATTTGGTTATGTCTATAAGGGGTGGATTGATGGTCAATCCCTTGGGGCTGCAAAGTCTGGATTGGGAATAGCTGTAGCTGTGAAGAAGCTTAAGCCTGAAGGTTTTCAAGGGCATAAGGAGTGGCTGTCTGAAGTCAATTATCTTGGCCAACTTCATCATCCAAATCTTGTCAACCTTATTGGATACTGCCTGGAGGGGGATAACCGGCTTCTAGTGTATGACTACATGGCCAATGGAAGCTTGGAAAATCATCTATTTCGCAAGAGCAGACAAGTACTTCCTTGGGCAACAAGAGTCAAAGTTGCTATTGGTGCTGCTCGAGGTCTCACCTTCCTACATGACTCTAATCAACAAATTATCTACCGTGATTTCAAGGCTTCTAATATTTTATTAGATTCGGAATTTAATGCAAAACTCTCAGACTTTGGATTGGCCAAAGCAGGGCCCACTGATGATCGTTCTCATGTTTCCACTCAAGTCCTGGGCACACAAGGCTATGCTGCTCCTGAATATATTGCTACAGGTCGGCTGACTACAAGGTGTGATGTCTATAGCTTTGGGGTTGTGCTATTGGAACTACTATCAGGGCGCCATGCTGTTGATAAAACAAAATCCGGAGTGGAACATAATTTGGTAGATTGGGCAAAGCCCTATTTGGGTGATAGGAGGAAATTGTTCCGGATTATGGACACCAAGTTAGAAGGACAATATCCTCAGAGAGCAGCTTATACAGTTGCAATTCTTGCATTACAATGTATTAGTGAGGCCAAGATTAGACCACAAATGTCTGAGGTTTTGGCTACCTTGGAACATCTCCCAGCTATCAGACATTCAGCTAGCCCATCTAGAGCAGAGGAAAAACCCATCCCAAGTCCCATAAGAGAGAGGGTTTGA 1212 0.4307 MVTPKHIGMVITPYDWLFPTDGEEHNYHYWKYAYDVTKVPRRSTHLLAHSGLTVHGHSDEGKPVILPTPRSEGDILSSPHLKAFTFNDLKNASRNFCPDNLIGQGGFGYVYKGWIDGQSLGAAKSGLGIAVAVKKLKPEGFQGHKEWLSEVNYLGQLHHPNLVNLIGYCLEGDNRLLVYDYMANGSLENHLFRKSRQVLPWATRVKVAIGAARGLTFLHDSNQQIIYRDFKASNILLDSEFNAKLSDFGLAKAGPTDDRSHVSTQVLGTQGYAAPEYIATGRLTTRCDVYSFGVVLLELLSGRHAVDKTKSGVEHNLVDWAKPYLGDRRKLFRIMDTKLEGQYPQRAAYTVAILALQCISEAKIRPQMSEVLATLEHLPAIRHSASPSRAEEKPIPSPIRERV 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi16g00067 403 ProSiteProfiles Protein kinase domain profile. 96 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi16g00067 403 Gene3D Phosphorylase Kinase; domain 1 68 181 - -
Sebi16g00067 403 SUPERFAMILY Protein kinase-like (PK-like) 74 376 IPR011009 -
Sebi16g00067 403 ProSitePatterns Protein kinases ATP-binding region signature. 102 135 IPR017441 GO:0005524
Sebi16g00067 403 MobiDBLite consensus disorder prediction 386 403 - -
Sebi16g00067 403 PANTHER OS01G0588500 PROTEIN-RELATED 73 378 - -
Sebi16g00067 403 CDD STKc_IRAK 102 378 - -
Sebi16g00067 403 Pfam Protein tyrosine and serine/threonine kinase 100 373 IPR001245 GO:0004672|GO:0006468
Sebi16g00067 403 MobiDBLite consensus disorder prediction 383 403 - -
Sebi16g00067 403 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
Sebi16g00067 403 FunFam Serine/threonine-protein kinase PBS1 182 393 - -
Sebi16g00067 403 Gene3D Transferase(Phosphotransferase) domain 1 182 393 - -
Sebi16g00067 403 FunFam Serine/threonine-protein kinase BIK1 66 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi16g00067 Sebi-Chr16 1107059 1109885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi16g00067 32 397 Glycoside Hydrolase AT3G07070 45.503 1.46e-102 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Sebi16g00067 PK_Tyr_Ser-Thr 1.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi16g00067 - - gmx:100791844 603.594