Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi16g00052 ATGTCATTTCACAGTGGAAATGCTAGTGGTTATTCTGCATTGGATTGGCCAGAAGAATTTCCCATACAAGATAGCTATTTTGATCCTATCCCTCTTATGGAGTGCAATTACTTTGCTGATCCTTTGTATGAAACTCTAGTCATTGAGCCAACACCAAGATTGCAAGACTATGATTTTTATGATGTGAAGAAGGGGTTTTCTCTATGGAACGAAATTGATGCTGGGTTTGATTCAGAAAAGAATGATTTTTTATATTGCAACAATGATGAAAGTAGTAAGGAAATGATTATGGAAGATGGGAAGGTTAATAGAGGCAGAGAAGAAAGGAGTGGCAGTACTAGAATGTTGTCAAGGAAGACCATATCTCAGTATTTCTATATGCCAATAACACAAGCAGCCAGAGAGCTTAATGTGGGGTTGACACTTTTGAAGAAAAGGTGCAGAGAGTTAGGGATTCGAAGGTGGCCCCACAGGAAGCTCATGAGCCTGCAAACACTCATAAATAATGTACAGGAGCTGGGGAAAGAGGAGGGGCCTGAGAGTGAAGAAAAGTTGAGGAATGCAATTGAGATATTGGAGAAGGAAAAGAAGCTTATGGAGGAAATGCCAGATATGCAATTGGAAGATCACACAAAAAGGCTTAGACAAGCGTGTTTTAAGGCTAACTATAAGAAGAGGAAGCTCATGGGGCAGATGGAACCACACTCTTCTTCTTCTTTCAGTGACACTGTTAGCTATGACTATTTTGAAACAAAGGGTGAATATAGTTTTTAG 774 0.3966 MSFHSGNASGYSALDWPEEFPIQDSYFDPIPLMECNYFADPLYETLVIEPTPRLQDYDFYDVKKGFSLWNEIDAGFDSEKNDFLYCNNDESSKEMIMEDGKVNRGREERSGSTRMLSRKTISQYFYMPITQAARELNVGLTLLKKRCRELGIRRWPHRKLMSLQTLINNVQELGKEEGPESEEKLRNAIEILEKEKKLMEEMPDMQLEDHTKRLRQACFKANYKKRKLMGQMEPHSSSSFSDTVSYDYFETKGEYSF 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi16g00052 257 Pfam RWP-RK domain 116 163 IPR003035 -
Sebi16g00052 257 Coils Coil 182 202 - -
Sebi16g00052 257 ProSiteProfiles RWP-RK domain profile. 97 184 IPR003035 -
Sebi16g00052 257 PANTHER PROTEIN RKD4 108 238 IPR044607 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi16g00052 Sebi-Chr16 642482 643446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi16g00052 104 234 AtRKD Transcription Factor Family AT1G18790 68.657 5.18e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Sebi16g00052 RWP-RK 4.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi16g00052 - - gmx:100788666 320.472