Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi16g00042 ATGGAAAACGTTTCTGTTTTATCTAAGGCAGAGGATAAGATGGATTTGCCTCCTGGATTTCGGTTTCACCCAACTGATGAAGAGCTTATAAGCCATTACCTGTACAAGAAGGTCATTGATACCAATTTCTCTGCCAGGGCCATTGGAGAAGTGGACCTTAACAAGTCTGAGCCTTGGGATTTGCCATGGAAAGCAAAAATGGGAGAAAAAGAGTGGTACTTTTTCTGTGTGAGAGACAGAAAATACCCAACAGGGTTGAGAACAAACAGAGCCACAGAAGCAGGGTATTGGAAGGCAACAGGGAAAGATAAGGAGATTTTCAGAGGAAAATCACTGGTTGGAATGAAGAAAACTCTTGTTTTCTACAAAGGGAGAGCACCCAAAGGAGAGAAAAGCAACTGGGTGATGCATGAATATAGACTTGAGGGTAAATTTTCAGTTCATAATCTACCTAAAACTGCAAAGAACGAATGGGTTATTTGCAGGGTGTTTCAGAAGAGTTTAGCTGGCAAGAAAACCCATATTTCTGGGATAATGAGGTTGGACTCAATAGGAAATGAATTGGGTCCTTCTGGTCTACCACCCCTCACAGATTCCTTGCCTTCCATTGCCAAAACCAAATCACTGATTGATTCGGCTTACGTGCCCTGCTTCTCCAATCCAATTGATGTTCAAAGAAACCACCAAGGAGGGGTCTTTGATTCCTTCACTAACTCCATATATGGGATTTCCTCAAATCCGTTAGATATTCTTCCAAGAATGACACCTTCTGGCTCACTATACTCCACTCATGGTGTTCAAGTTCAAGCTAATTTGCCATTTCCAGGTTCTGTTTACACTATGCAGGACCAGTCCATCCTAAGAGCCTTGTATGAGAACAATGGATCAAACTTGATAAATGGTTTCAAGACAGAGAGGGAAATGGTCAGTGTCTCACAGGAAACAGATTTAACCACTGATATGAATGTAGAAACCTCTTCAGTGGTATCAAATTTTGATATGGGTAGGAGCCACTTTGACAATCAGAATCATCCTCATGCTTCTGTTGCAGCAGTGGACCTTGATGGTTTGTGGAATTACTAA 1083 0.4174 MENVSVLSKAEDKMDLPPGFRFHPTDEELISHYLYKKVIDTNFSARAIGEVDLNKSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFRGKSLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLEGKFSVHNLPKTAKNEWVICRVFQKSLAGKKTHISGIMRLDSIGNELGPSGLPPLTDSLPSIAKTKSLIDSAYVPCFSNPIDVQRNHQGGVFDSFTNSIYGISSNPLDILPRMTPSGSLYSTHGVQVQANLPFPGSVYTMQDQSILRALYENNGSNLINGFKTEREMVSVSQETDLTTDMNVETSSVVSNFDMGRSHFDNQNHPHASVAAVDLDGLWNY 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi16g00042 360 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 277 - -
Sebi16g00042 360 SUPERFAMILY NAC domain 11 166 IPR036093 GO:0003677|GO:0006355
Sebi16g00042 360 Pfam No apical meristem (NAM) protein 17 141 IPR003441 GO:0003677|GO:0006355
Sebi16g00042 360 Gene3D NAC domain 25 169 IPR036093 GO:0003677|GO:0006355
Sebi16g00042 360 ProSiteProfiles NAC domain profile. 16 166 IPR003441 GO:0003677|GO:0006355
Sebi16g00042 360 FunFam NAC domain-containing protein 100-like 25 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi16g00042 Sebi-Chr16 491178 492476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi16g00042 14 360 NAC Transcription Factor Family AT5G07680 59.195 7.22e-138 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sebi16g00042 NAM 1.9e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi16g00042 - - lja:Lj0g3v0155359.1 626.32