Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi16g00035 ATGGAGAATGAGGCTGAGACTGAGGAAATTATTAATTTGAATAGTAAAGAGAACAATAGTGTTAGAAATAATCCTAAGAGTGGTGATGTCTTCATTGACAGAAGTAAAGTCAGGATTTTGTTATGCGATAACGATTCCAAGAGTTCCGAAGAGGTTACTACTCTTCTTCTGGGATGCTCTTATCAGGTTACTTCAGTAAGGTCACCAAGGCAGGTAATTGATGCACTGAATGCAGAGGGGCAATATATAGATATCATACTAGCTGAACTTGACCTTCCGATAAAGAAGGGCATGAAAATGTTGAAGTACATAGCGCGGGATAAAGAATTGCGCCGAATCCCTGTTATAATGATGTCTGCACAAGATGAGGTTTCTATTGTCGTTAAGTGCTTGAGACTTGGAGCAGCGGACTATCTAGTAAAGCCTTTACGCACTAATGAACTATTAAACTTGTGGACACACATGTGGAGAAGGAGACGCATGCTTGGACTTGTGGAGAACAACATCTTGAATTATGACTTTGATCTGGTAGCATCAGACCCAAGTGATGCCAATACAAACAGTACCACCTTGTTCTCTGATGACACAGATGACAGGTCCAAAAGAAGCACTAATCCAGAGGCAGGAATATCTGTCCAACAAGAACAAGAGGCTAGTATTGCCACAGCTGCTGCTATTGTTGAGGAGCTTCCAGATGCTCATGTATCAGAGTATCAGCCTGATGTACCCGGAATTAGTGATCGCCGAACAGGAAACTTTTCATCTGGTCCAAAGAAGAGCGAACTAAGGATCGGAGAGTCATCAGCCTTTTTCACTTATGTCAAAGCAACAATTCCGAAGAGTAACTTTGAAGAGATTGCTCATGTTGACAATAATGCTACTACACAAGTAAGGGTGGAAGATATGAATCAAGCATGTACTCAACAGGGGGGTAATGACTTTAAAACACAGGAAAATGGAGAAATGTTTGAAAGCCATTCTCAAGATGACTTGCCCAGCAGCAATAGTATCCCTGATTCTTTCTCTCTTGAGAGATCTTGTACTCCACCTGCATCAATGGAAGTTTTACAGCAAAAGAATTACAAGGAAGGACATCCTCAGGGATTGGTGCATCCAAGAAATGGAAGCCATGGTTCTGAGCTTGAACCATCTGGCATGCCTGCCCAGCATGCTTATCCATATTATATTTCAGGAGGTTTTAATCATGTTATGATGCCATCATCAGCCCAACTGTATCAAAAGAATATCCAGGACCTGCATAATCATGCTAATTCATCTATGATTGCACAGTACAATCATCTTCCCCAATGTCCTCCTCATGCAGCTGGGATGACATCCTTCCCATATTATCCAATGAGTATTTGCTTACAACCTGGTCAGGTTTCTACAACTAATTCATGGCCATCATTAGGAGGTTCAAGTTCATGTGAAGTAAAAATAAGTAAAGTTGATAGGAGAGAAGCAGCATTGATGAAGTTTAGACAGAAAAGGAAAGAGCGCTGCTTTGATAAGAAAATTAGGTATGTCAACAGAAAACGACTTGCTGAAAGGCGGCCTCGTGTGAGGGGACAGTTCGTCAGAAAGTTGAATGGCATTGATGTGGATCTTAATGGACAACCTGCTTCCACTGACTATGATGAAGATGATGAAGAGGAGGAAGAAAACCATGGAGCAAGAGATTCCTCTCCCGAGGATGCTTGA 1701 0.4162 MENEAETEEIINLNSKENNSVRNNPKSGDVFIDRSKVRILLCDNDSKSSEEVTTLLLGCSYQVTSVRSPRQVIDALNAEGQYIDIILAELDLPIKKGMKMLKYIARDKELRRIPVIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLVENNILNYDFDLVASDPSDANTNSTTLFSDDTDDRSKRSTNPEAGISVQQEQEASIATAAAIVEELPDAHVSEYQPDVPGISDRRTGNFSSGPKKSELRIGESSAFFTYVKATIPKSNFEEIAHVDNNATTQVRVEDMNQACTQQGGNDFKTQENGEMFESHSQDDLPSSNSIPDSFSLERSCTPPASMEVLQQKNYKEGHPQGLVHPRNGSHGSELEPSGMPAQHAYPYYISGGFNHVMMPSSAQLYQKNIQDLHNHANSSMIAQYNHLPQCPPHAAGMTSFPYYPMSICLQPGQVSTTNSWPSLGGSSSCEVKISKVDRREAALMKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKLNGIDVDLNGQPASTDYDEDDEEEEENHGARDSSPEDA 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi16g00035 566 SMART REC_2 37 152 IPR001789 GO:0000160
Sebi16g00035 566 MobiDBLite consensus disorder prediction 237 260 - -
Sebi16g00035 566 Pfam Response regulator receiver domain 39 150 IPR001789 GO:0000160
Sebi16g00035 566 PANTHER TWO-COMPONENT RESPONSE REGULATOR 37 244 IPR045279 GO:0009736
Sebi16g00035 566 MobiDBLite consensus disorder prediction 364 383 - -
Sebi16g00035 566 MobiDBLite consensus disorder prediction 307 335 - -
Sebi16g00035 566 MobiDBLite consensus disorder prediction 532 566 - -
Sebi16g00035 566 SUPERFAMILY CheY-like 33 162 IPR011006 -
Sebi16g00035 566 Pfam CCT motif 486 528 IPR010402 GO:0005515
Sebi16g00035 566 MobiDBLite consensus disorder prediction 185 215 - -
Sebi16g00035 566 ProSiteProfiles CCT domain profile. 486 528 IPR010402 GO:0005515
Sebi16g00035 566 Gene3D - 37 239 - -
Sebi16g00035 566 ProSiteProfiles Response regulatory domain profile. 38 156 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi16g00035 Sebi-Chr16 432971 438085 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi16g00035 26 565 Response Regulator Gene Family AT5G61380 51.510 0.0 532
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Sebi16g00035 Response_reg 5.2e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi16g00035 K12127 - gmx:100786522 952.199