Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi16g00028 ATGGCGCTGTTCAGAAGATTCTTCTACCGGAAGCCGCCGGATCGGCTTCTGGAGATCTCCGAGAGAGTTTATGTTTTTGATTGTTGCTTCTCCACGGATGTCTTGGAAGAAGATGAATACAGAGATTATATGGGGGGAATTGTGGCTCAGCTACAGGATCACTTTCCAGATGCTTCTTTCATGGTGTTCAACTTCAAAGAAGGGGATAGACGCAGCCAAATCTCAGACATATTTTCTCAATATGACATGACAGTTATGGAGTATCCTCGGCAATATGAGGGTTGTCCCCTTCTTCCTTTAGAAATGATCCATCACTTTCTTCGATCAAGTGAAAGCTGGTTGTCTTTGGAGGGGCAACAGAATGTACTCTTGATGCACTGTGAAAGGGGAGGTTGGCCTGTGCTGGCATTTATGCTAGCAGGTCTTCTATTATATCGGAAACAGTACAGTGGGGAGCAAAAGACTCTTGAAATGGTCCACAAGCAAGCTCCCAGAGAACTACTACTACACCTTTTATCTCCTTTGAACCCACAGCCTTCTCAGTCTAGATATCTTCAGTATATTTCCAGGAGACATTTGGGTTCTGAGTGGCCACCGTCAGAAACACCCTTGTATTTGGATTGTCTAATTCTTAGAGTCCTTCCATTATTTGATGATGGAAAAGGTTGCAGGCCTGTTGTACGTGTTTATAGTCCAGACCCTTCAAAACCTGCCAACAGAAGTTCAAAGCTGCTTTTTTCAACTTCAAAATCCAAAAAACATGTTCGCCACTACACACAGGCAGAGTGTATGCTCGTGAAAATCGATATCCATTGTCGTGTTCAAGGGGATGTGGTTCTTGAGTGCATACATTTAAATGAAGATTTTATGCGTGAGGAGATGATGTTTAGAGTTATGTTCCATACTGCATTTGTGCGGTCAAATACATTGATGCTGAGCCGTGATGAAATTGATATTTTGTGGGATGCCAAGGATCAATTTCCCAAGGACTTCAAAGCAGAGGTGCTTTTTTTGGACGCTGATGCTGTTATACCTGATCTAAACACAGCCACGGTGAGTGAAGATGCAAATGAGACTGAAAGTGCTGAGACAGAAAGTGCTTCACCTGAGGAATTCTATGAAGTAGAAGAGATTTTCAGCAATGCAATTGATGCACAGGAAGAGAAGGCAGAGTATGATTCCCATGCTTTTCCTGACAATGCAGTGGATGATGAAAATCATAAAGAGGTCTGGAAGGAAGAGTTGGATCCTCCTACTTTTCAGGACTGTACACCAGATGATGGGATTCACAAACAAGTTGGCAAGATGGATTCTGGTATTAGTGTGGTGAAAGATATCTCTGTTGATGATGTGAACTACAAGTTCAATGAGAACATGGATTCAGATCCTCATGCAGTAAAGGACATTGCCGTGGATGATGGAGAAATTAAGTCAACTTTCACTGCAGTCACTTCTGATATGATGAAGCCTCTAGAAACAAAGGAAGTCACTGTGGATGTGCACCAGGAATTAGCAATTATGCAAAACAAATGTGATGAAGACAATGAAGCAACAGAAAAGGAATTAGACTCCAAGGAAGGGCTGCAGATGCCTGATAATTCCAAACAAAATTCTGGTAAACTACTTCCATCTACTGCCAAGAAACAACTTCCATCAAACTCAAAGCCAGTCGGAGACACCTTGGTAGCAAAACAAAAGAATAAACAGCAAGAAACCAATGGTGGTTTTCAGGCAAAACAAGCTAAGCCCACTGCAGTAACTAGGTGGATTCCTTCTAACAAGGGTTCTTACACAAATTCAATGCATGTCTATTATCCACCATCAAGTCGTAAGTTTGCTACTTCAAAATCTTCTGGCTACATAGTAGCAGAAATAGATGCAAAACATCCACCATCACCATCACCATTACCATCAATTAAAGAGCTTCAGTCGGCTACTCAAGCACAACAACAGAGCTCAGAGCAAGTGCTACAGCCCCCCCAACCGTCTCCCCCTCCATCTCCATCTCATGCTAGGAGCTTATTACATTCCCCATCCTCCTCCATTTCTGAAGTGCTTACTGCCGTGACCCCTTCAAGGCCACTGCCTCCTCCACCACCACCATTGCCTCCTCCAAATGCTCCTCCACCACCACCACCACCACCACCTCCTTTTAGTAATGCTCCACCACCACCACCTCCACCTCCTTTTAGTAGAGTTCCGCTACCTCCACCTTCATCTCTTTTTAGTAAAGCTCCCCCACCGCCGCCTCCACCTCCTTTTAGTAAAGCTCCTCCTCCTCCTTTTAGTAATGCTCCTCCTCCACCACCTCCACCTCCTTTTAGTAATGCTCCTCCTCCACCACCTCCACCTCCTTTTAGTAAAACACCACCCCCACCACCTCCACCACCTTTTAGTAGTGCTCCACCACCCCCGCCTCCTCCATTGCATGGAGCTCCTCCCCCACCTCCCCCTCTTCCTTCATTAAGTGGAGCCCCACCGCCACCACCACCTCCTCCAATGTCTAGAGCCCCACCACCTCCACCAATACGTGGGGCACCACCACCACCTCCTCCTCCAATGCGTGGAGCACCACCACCACCACCTCCTCCAATGCATGGAGCTCCACCTCCACCACCACCTCCTGGTGGTCGAGGCCCACCTCCTCCTGGTGCTCGAGGTCCACCACCTCCACCTCTCCCAGGTGCTCCTAGACCTCCTGGTGGTGCACCTCCACCACCTCCGCCCTTAGGTTCCAAAGGTGCAAATGTTGGAGCTGATCCGAGAGGTAGAGGCCGTGGATATGCACGCCCCGCAGGAGCTGGTGCAGTGGCACCCCGTCGATCCTCCCTAAAGCCTCTACATTGGAGCAAGGTTACAAGGGCATTACAAGGAAGTTTATGGAAGAATTACAAAGACACGGAGAACCTCAAATGTAATTCTTCTTGTCTACTATTGCATCTAGAGAAGCTTTTCTCTGCGAATGTTCCAAAACCTGCTGATTCAAGTGGCAAATCTGGAGGGCGACGCAAGTCTGTTGGATCTAAAACTGACAAAGTCCACTTGATTGACCTAAGGAGGGCTAACAATACTGAAATTATGCTCACTAAGGTTAAGATGCCACTTCCTGACATGATGGCTGCAGTTCTAGCTCTGGATGAGTCAGTATTAGACGTTGATCAGGTGGAAAATCTCATTAAGTTTTGTCCTACAAAAGAGGAGATGGAACTTTTGAAGGGATACACTGGTGACAAAGAGAATTTGGGGAAGTGTGAACAGGTGCCAAGGGTGGAGTCAAAATTAAGAGTATTCTCTTTCAAAATTCAGTTTGGGTCTCAGGTTACAGAATTCAAGAAGAGTTTAAACACTGTGAACTCTGCCTGTGAAGAGGTCCGAAAATCTGTCAAACTGAAGGAGATCTTGAAGAAAATTCTTTTTTTGGGTAATACATTAAATCAGGGAACAGCAAGGGGATCTGCAGTTGGGTTCAAGTTGGATAGTCTTTTAAAGCTCACTGACACTCGTGCTTCTAACAATAAGATGACACTGATGCATTATCTTTGCAAGGTCCTAGCTGAAAGATCGCCTGGACTCCTTGATTTTCATCAAGACCTTGTTAGCCTGGAAGCTGCCACTAAGATACAATTGAAGTCATTAGCAGAAGAGATGCAGGCAATCATCAAGGGATTAGAAAAGGTTAAACAAGAGCTTGCTGCATCTGAAAATGATGGACCTGTGTCTGAAGTTTTCCGTAAGACATTGAAAGGATTCATAACTGGAGCTGAGTCAGAGGTGACATCTTTAACAAACCTATATTCTGTGGTGGGTAGAAATGCAGATGCACTTGCTCTATATTTTGGTGAGGATCCTGCTCGATGCCCATTTGAGCAAGTTACTACAACTCTCCTAAATTTCATAAGGTTGTTCCGGAAAGCCCATGAAGAGAATTGCAAACAAGCAGAGTTAGAGAAGAAGAAAGCCGTGAAAGAGGCTGAAATGGAGAAGGCTAAGGGCATCAACTTGACAAAGAAGAGTGCAAAAGATAGTTGA 4029 0.4537 MALFRRFFYRKPPDRLLEISERVYVFDCCFSTDVLEEDEYRDYMGGIVAQLQDHFPDASFMVFNFKEGDRRSQISDIFSQYDMTVMEYPRQYEGCPLLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYSGEQKTLEMVHKQAPRELLLHLLSPLNPQPSQSRYLQYISRRHLGSEWPPSETPLYLDCLILRVLPLFDDGKGCRPVVRVYSPDPSKPANRSSKLLFSTSKSKKHVRHYTQAECMLVKIDIHCRVQGDVVLECIHLNEDFMREEMMFRVMFHTAFVRSNTLMLSRDEIDILWDAKDQFPKDFKAEVLFLDADAVIPDLNTATVSEDANETESAETESASPEEFYEVEEIFSNAIDAQEEKAEYDSHAFPDNAVDDENHKEVWKEELDPPTFQDCTPDDGIHKQVGKMDSGISVVKDISVDDVNYKFNENMDSDPHAVKDIAVDDGEIKSTFTAVTSDMMKPLETKEVTVDVHQELAIMQNKCDEDNEATEKELDSKEGLQMPDNSKQNSGKLLPSTAKKQLPSNSKPVGDTLVAKQKNKQQETNGGFQAKQAKPTAVTRWIPSNKGSYTNSMHVYYPPSSRKFATSKSSGYIVAEIDAKHPPSPSPLPSIKELQSATQAQQQSSEQVLQPPQPSPPPSPSHARSLLHSPSSSISEVLTAVTPSRPLPPPPPPLPPPNAPPPPPPPPPPFSNAPPPPPPPPFSRVPLPPPSSLFSKAPPPPPPPPFSKAPPPPFSNAPPPPPPPPFSNAPPPPPPPPFSKTPPPPPPPPFSSAPPPPPPPLHGAPPPPPPLPSLSGAPPPPPPPPMSRAPPPPPIRGAPPPPPPPMRGAPPPPPPPMHGAPPPPPPPGGRGPPPPGARGPPPPPLPGAPRPPGGAPPPPPPLGSKGANVGADPRGRGRGYARPAGAGAVAPRRSSLKPLHWSKVTRALQGSLWKNYKDTENLKCNSSCLLLHLEKLFSANVPKPADSSGKSGGRRKSVGSKTDKVHLIDLRRANNTEIMLTKVKMPLPDMMAAVLALDESVLDVDQVENLIKFCPTKEEMELLKGYTGDKENLGKCEQVPRVESKLRVFSFKIQFGSQVTEFKKSLNTVNSACEEVRKSVKLKEILKKILFLGNTLNQGTARGSAVGFKLDSLLKLTDTRASNNKMTLMHYLCKVLAERSPGLLDFHQDLVSLEAATKIQLKSLAEEMQAIIKGLEKVKQELAASENDGPVSEVFRKTLKGFITGAESEVTSLTNLYSVVGRNADALALYFGEDPARCPFEQVTTTLLNFIRLFRKAHEENCKQAELEKKKAVKEAEMEKAKGINLTKKSAKDS 1342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi16g00028 1342 ProSiteProfiles Formin homology-2 (FH2) domain profile. 934 1328 IPR015425 -
Sebi16g00028 1342 Gene3D Protein tyrosine phosphatase superfamily 14 205 IPR029021 -
Sebi16g00028 1342 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 337 IPR035892 -
Sebi16g00028 1342 ProSiteProfiles C2 tensin-type domain profile. 201 340 IPR014020 -
Sebi16g00028 1342 PANTHER FORMIN-J 1 729 - -
Sebi16g00028 1342 MobiDBLite consensus disorder prediction 638 657 - -
Sebi16g00028 1342 MobiDBLite consensus disorder prediction 509 599 - -
Sebi16g00028 1342 MobiDBLite consensus disorder prediction 623 941 - -
Sebi16g00028 1342 MobiDBLite consensus disorder prediction 672 688 - -
Sebi16g00028 1342 Gene3D Formin, FH2 domain 936 1314 IPR042201 -
Sebi16g00028 1342 SMART it6_source 692 1342 IPR015425 -
Sebi16g00028 1342 Coils Coil 1303 1332 - -
Sebi16g00028 1342 MobiDBLite consensus disorder prediction 350 370 - -
Sebi16g00028 1342 Coils Coil 1209 1236 - -
Sebi16g00028 1342 MobiDBLite consensus disorder prediction 691 912 - -
Sebi16g00028 1342 MobiDBLite consensus disorder prediction 529 599 - -
Sebi16g00028 1342 Pfam C2 domain of PTEN tumour-suppressor protein 200 337 IPR014020 -
Sebi16g00028 1342 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 189 IPR029021 -
Sebi16g00028 1342 Gene3D - 206 337 - -
Sebi16g00028 1342 SMART PTEN_C2_2 199 339 IPR014020 -
Sebi16g00028 1342 PRINTS Proline rich extensin signature 657 669 - -
Sebi16g00028 1342 PRINTS Proline rich extensin signature 733 750 - -
Sebi16g00028 1342 PRINTS Proline rich extensin signature 687 708 - -
Sebi16g00028 1342 PRINTS Proline rich extensin signature 709 725 - -
Sebi16g00028 1342 PRINTS Proline rich extensin signature 625 637 - -
Sebi16g00028 1342 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1011 1330 - -
Sebi16g00028 1342 MobiDBLite consensus disorder prediction 509 528 - -
Sebi16g00028 1342 Pfam Formin Homology 2 Domain 940 1302 IPR015425 -
Sebi16g00028 1342 MobiDBLite consensus disorder prediction 989 1009 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi16g00028 Sebi-Chr16 386145 399261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi16g00028 1 608 FH2 protein (formin) Gene Family AT5G07740 63.830 0.0 771
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi16g00028 - - gmx:100785475 1017.68