Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi16g00002 ATGGGAGATCTTTCTTTGTTTAGTCCACATGAAATAGAGAAATATGAATTTGGAAATATTGACATCGCATACAAGTTTTACTTTGAATATGGGTTTGCTAATGGGTTTGGGATACGAAAGGGTCGAACTTTGAAAAATAGGAAAACGTTGGAGGAGTATCAGAAAGAGTTAATGTGCTATAGAGCTGGCCAGCGTGAAGACCATGGTCTTAAATTGGAAGATAGGGTCCGTGAGCCTAGAGCTATGACTAAGTGTGATTATGAACACAACCATGATCGTCTCGGTGCAGTGCATTGCAACATGCTTCTGGTGTATAGAAGAATGTCTAATAGTGATGTGGTCCAAATGAATAACATGATGAAAGTTGGTATTCAGCCACCAAATTTATTCAACATTTTTGCTAACCAATCTGGAGGGTATAAGAAGATAGGTTTTCGGAAGAAAGACATGTATAACAAGATTAGTGAGCAAAGGTGGGTGTTGATGAGGGCACAAAATTTGAGTGTTAGTGGTATTGTACAGGCTGTTCGGTGTACTATATTTATAGTGGTCAACCAAATGGGTAGGAGTGGGGAATGGAGGGTATCTTTGTATGACACAAGCAAGGAATTAAAATGTGCATGCCTCAGAATGGAATCTAGAGGGTTACCATGTGAGCATATAGTTGTTGTGTTGTCTCATTTAGGGATTGATGAGATCCTTGAATCGTTGGTCCTTAAAAGGTGGAGCAAGGCTATGAAGGATGGGTTAGGTGGTAAAGAATTTGAAGCAAATCATTGTGTGGATGCTGGTAGGAGTGTTAGGAGGGCTGCACTAGTTGGTATATATGATCATGTTAGTGAGTACAAGGCTGCAACCATAGAAAAATTTAAGGCTGAACGTGATAAACTTGTTGAGGATTGGAGGCAATGCCAGGTTGAATTTGAAAGTGAACAAGAGTTGGGATCTGGTGGTCCCAATTTCACACATGAAGGTCCAAGGAACCCAAGACGTGCATCAACCAAAGGTCAGTCGGTGGTTCATCATCTTCAGGCATCAGATCTAGGAAAAACAAAATTGTTCCATATGTAA 1071 0.4034 MGDLSLFSPHEIEKYEFGNIDIAYKFYFEYGFANGFGIRKGRTLKNRKTLEEYQKELMCYRAGQREDHGLKLEDRVREPRAMTKCDYEHNHDRLGAVHCNMLLVYRRMSNSDVVQMNNMMKVGIQPPNLFNIFANQSGGYKKIGFRKKDMYNKISEQRWVLMRAQNLSVSGIVQAVRCTIFIVVNQMGRSGEWRVSLYDTSKELKCACLRMESRGLPCEHIVVVLSHLGIDEILESLVLKRWSKAMKDGLGGKEFEANHCVDAGRSVRRAALVGIYDHVSEYKAATIEKFKAERDKLVEDWRQCQVEFESEQELGSGGPNFTHEGPRNPRRASTKGQSVVHHLQASDLGKTKLFHM 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi16g00002 356 PANTHER OS01G0519700 PROTEIN 15 158 - -
Sebi16g00002 356 SMART 26again6 204 231 IPR006564 GO:0008270
Sebi16g00002 356 ProSiteProfiles Zinc finger SWIM-type profile. 193 229 IPR007527 GO:0008270
Sebi16g00002 356 MobiDBLite consensus disorder prediction 311 342 - -
Sebi16g00002 356 Pfam SWIM zinc finger 194 228 IPR007527 GO:0008270
Sebi16g00002 356 Pfam FAR1 DNA-binding domain 25 86 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi16g00002 Sebi-Chr16 11413 13440 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Sebi16g00002 FAR1 1.2e-06 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi16g00002 - - mtr:112420123 144.821