Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi169g00130 ATGAGGCAGAGTTGTTGGGCGAACATGCCTCAGGAGCTACTCCGTGAAGTGCTCCTCCGAATCGAGGCATCGGAGGACACGTGGCCGCCGAGAAAGAGCGTGGTGGCGTGTGCCGGAGTGTGCCGGAGCTGGAGGGAGATCACAAAGGACATCGTCAAAACACCTGAACTTTCTGCTAAGATAACCTTCCCCATCTCCGTTAAGCAGCCTGGTCCAAGGGAACAACTTGTCCAGTGCTTTATAAAGCGCAACCGGTCCACCCAAACATATTATTTGTTTCTCAGTTTAACTAGTACACTCTCTGATGATGGAAAGTTCCTTCTGGCTGCACGGAAATGCAGACGTCCCACCTGTACAGATTATATCATCTCTCTAGATGCAGATGATATGTCAAGGGGAAACAACACCTATGTTGGGAAACTGAGATCGAATTTTCTAGGAACCAAGTTCACAATCTATGATGCCCAGCCACCTCATGCAGGGGCAAAGATTACAAAAAGTCGTTCAACTAGGCTAGTGAATCTAAAACAAGTTTCACCCAAGGTCCCAACAGGCAACTATCCAGTGGCACACATCTCATATGAATTGAATGTGCTAGGCTCTAGGGGGCCTAGGAGAATGAATTGTGTCATGGATTCCATTCCTGCCTCTTCAATTGAACCAGGAGGTGTAGCCCCTACGCAGACTGAGTTTTCTCTTAACAACATAGATATATTTCCCTCATTCCCTTTTTTTCGGTCAAAATCAAACCGTGCCGAAAACTCCCTATCTGGACCCCTTGGTGATCAAAATCAAAAGGATGGGATGCTTGTATTGAAAAACAAGGCTCCCAGGTGGCATGAGCAGCTGCAGTGTTGGTGCTTAAACTTTCGTGGGCGGGTGACAATTGCCTCAGTTAAAAACTTTCAGCTGGTGGCTTCTGCAGAAAATGGACCTGCGGGATCAGAACATGATAAGATTATCCTACAGTTTGGTAAAGTTGGGAAGGATTTGTTTACAATGGATTACCGGTATCCCATCTCAGCATTTCAGGCATTTGCAATCTGCCTCAGCAGCTTTGATACCAAGATTGCATGTGAATGA 1083 0.4654 MRQSCWANMPQELLREVLLRIEASEDTWPPRKSVVACAGVCRSWREITKDIVKTPELSAKITFPISVKQPGPREQLVQCFIKRNRSTQTYYLFLSLTSTLSDDGKFLLAARKCRRPTCTDYIISLDADDMSRGNNTYVGKLRSNFLGTKFTIYDAQPPHAGAKITKSRSTRLVNLKQVSPKVPTGNYPVAHISYELNVLGSRGPRRMNCVMDSIPASSIEPGGVAPTQTEFSLNNIDIFPSFPFFRSKSNRAENSLSGPLGDQNQKDGMLVLKNKAPRWHEQLQCWCLNFRGRVTIASVKNFQLVASAENGPAGSEHDKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi169g00130 360 CDD F-box_AtTLP-like 6 50 - -
Sebi169g00130 360 ProSitePatterns Tub family signature 2. 345 360 IPR018066 -
Sebi169g00130 360 PANTHER TUBBY-RELATED 3 358 - -
Sebi169g00130 360 SUPERFAMILY Tubby C-terminal domain-like 55 360 IPR025659 -
Sebi169g00130 360 ProSitePatterns Tub family signature 1. 290 303 IPR018066 -
Sebi169g00130 360 Gene3D Tubby Protein; Chain A 63 360 IPR025659 -
Sebi169g00130 360 PRINTS Tubby superfamily signature 272 289 IPR000007 -
Sebi169g00130 360 PRINTS Tubby superfamily signature 338 360 IPR000007 -
Sebi169g00130 360 PRINTS Tubby superfamily signature 121 137 IPR000007 -
Sebi169g00130 360 PRINTS Tubby superfamily signature 186 213 IPR000007 -
Sebi169g00130 360 PRINTS Tubby superfamily signature 290 306 IPR000007 -
Sebi169g00130 360 PRINTS Tubby superfamily signature 137 161 IPR000007 -
Sebi169g00130 360 PRINTS Tubby superfamily signature 317 336 IPR000007 -
Sebi169g00130 360 Pfam Tub family 67 355 IPR000007 -
Sebi169g00130 360 FunFam Tubby-like F-box protein 63 360 - -
Sebi169g00130 360 Gene3D - 1 57 - -
Sebi169g00130 360 Pfam F-box domain 6 53 IPR001810 GO:0005515
Sebi169g00130 360 SUPERFAMILY F-box domain 3 50 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi169g00130 Sebi-Chr169 1574819 1577647 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi169g00130 1 360 TUB Transcription Factor Family AT2G47900 75.414 0.0 565
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Sebi169g00130 Tub 1.5e-114 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi169g00130 K19600 - gmx:100778346 667.922