Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi169g00118 ATGAGCAAAATCAATGGTATTAAGTTGTATAAAACAGATGAGAGGAACCTTGGAAGGGATGCATCCATCGTTGAGGCACGTACCACTGAGGGTACCATCGAGAAGCATGGATGCATCCCTTCCAAGAGCTACTCCTTGCTGGGTTTTGTGAGGGGTGGCTTTGATTTGCTTGGATTTGATATGGGTGGGTGTTTTCCTTGTTTTGGATCATCCAACAAGGAGGACAGTGGTAGTGTGGTGAAGGAAGTCGCCAAAAAAGATTCTTTTAAAGAAGCTTCTCTTCCTCAGTCTCATCACCCCAGCAGGGTTAGCTCAGATAAATCAAAATCACGGAGTGTCTCAGATCCTAAGAAGGAAACACCAGTTCCAAAGGATGGCCCAACTGCCCATATTGCCGCACAAACATTTACATTCCGAGAGCTTGCTGCTGCTACAAAGAATTTTAGGCCAGAATGTTTATTAGGTGAAGGAGGTTTTGGACGTGTTTACAAAGGTCACCTCGAGAGCACAGGACAAGTAGTTGCTGTAAAACAGCTTGACCGAAATGGCCTTCAAGGAAATCGAGAGTTTTTGGTGGAAGTTCTCATGCTCAGCCTTTTACATCATCCAAATCTTGTGAACTTGATTGGTTATTGCGCTGATGGCGATCAGCGGCTGCTTGTTTATGAATTTATGCCATTGGGATCTTTGGAGGATCATTTACATGATCTTCCTCCTGACAAGGAGCCTCTGGACTGGAACACTAGGATGAAAATAGCGGCTGGTGCAGCAAAGGGGTTGGAATATTTGCATGATAAGGCAAATCCTCCTGCACGACCTCTTTTTAAAGACCGTAGGAAGTTCCCCAAAATGGCTGACCCTCTACTTCAAGGGCGATATCCAATGCGAGGACTGTATCAAGCACTTGCAGTTGCAGCAATGTGTTTGCAGGAACAAGCTGCTACAAGGCCTCTTATTGGAGATGTTGTGACTGCTCTCACATATCTGGCCTCCCAGACATATGACCCAAATGCAGCCTGTCAGTCTAACAGGGTTGGTCCATCAACCCCTAGGAACAGAGATGACAGAAGAAGCATGGTGGATGGTGTGGATAGCCCGGACCGTGGACGGCTTGGCTCCCCTTCCACCCACAGAAACTCACCTGACTTCAGGAAGAGAGATGGTAGGGATCCAAGTGAGTTGGGCAGGATTGACACTGGTGGTGGGTCAGGGAGAAAATGGGGATTGGATGATTTAGAAAGACAGGAATCTCAGAGAGACAGCCCTGTAAATACTGGAAGAGCAAGAGAGACTCCAAGGAACCGTGACCTGGACAGAGAACGCGCGGTTGCAGAAGCAAAAGTTTGGGGTGAGAATTGGAGGGTGAAGAAGAGAGCAAATGTCATGGGTAGCTTTGATGCAACAAATGAGTGA 1413 0.4706 MSKINGIKLYKTDERNLGRDASIVEARTTEGTIEKHGCIPSKSYSLLGFVRGGFDLLGFDMGGCFPCFGSSNKEDSGSVVKEVAKKDSFKEASLPQSHHPSRVSSDKSKSRSVSDPKKETPVPKDGPTAHIAAQTFTFRELAAATKNFRPECLLGEGGFGRVYKGHLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTYDPNAACQSNRVGPSTPRNRDDRRSMVDGVDSPDRGRLGSPSTHRNSPDFRKRDGRDPSELGRIDTGGGSGRKWGLDDLERQESQRDSPVNTGRARETPRNRDLDRERAVAEAKVWGENWRVKKRANVMGSFDATNE 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi169g00118 470 ProSitePatterns Protein kinases ATP-binding region signature. 154 177 IPR017441 GO:0005524
Sebi169g00118 470 MobiDBLite consensus disorder prediction 349 364 - -
Sebi169g00118 470 ProSiteProfiles Protein kinase domain profile. 148 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi169g00118 470 MobiDBLite consensus disorder prediction 379 394 - -
Sebi169g00118 470 Pfam Protein tyrosine and serine/threonine kinase 153 266 IPR001245 GO:0004672|GO:0006468
Sebi169g00118 470 MobiDBLite consensus disorder prediction 102 124 - -
Sebi169g00118 470 MobiDBLite consensus disorder prediction 89 129 - -
Sebi169g00118 470 MobiDBLite consensus disorder prediction 337 440 - -
Sebi169g00118 470 FunFam Serine/threonine-protein kinase PBS1 121 224 - -
Sebi169g00118 470 SUPERFAMILY Protein kinase-like (PK-like) 134 266 IPR011009 -
Sebi169g00118 470 PANTHER OS07G0668900 PROTEIN 271 337 - -
Sebi169g00118 470 Gene3D Transferase(Phosphotransferase) domain 1 129 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi169g00118 Sebi-Chr169 1465137 1473770 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi169g00118 271 331 Glycoside Hydrolase AT3G07070 57.377 7.25e-17 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Sebi169g00118 PK_Tyr_Ser-Thr 4.4e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi169g00118 - - gmx:100814575 387.497