Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi169g00116 ATGAAGGACCCTGTGACAGCCATAACAGGCATAACATATGATAGAGAAAGCATTGAGAAGTGGTTACTAAGAGCCAAACATTGTGTTTGCCCTGTTACCAAGCAACCACTATCAAGAAATCCTGAGTCCTTAACTCCCAATCATACACTACGCAGGCTAATCCAAGCATGGTGTTCATCAAAAGGTGTTGATCGAATTCCAACCCCAAAAGCCCCTCTTGACAAAATCCAAATTCAGAAACTTGTCAAGGACCTTGATGTTCCTCATTGTTACCAAACAACATTGGTGAAGATGCATGATTTGGCTACACAGAGTGAGAGGAACAGAACATGCATGGCTGAAGCAGGGGTAGCAAAAGCTATGGTCATGGTGATTAAGAACAATTTCAAGGAAGGGAAAACAACTTGCTTAGAAGAAGCTCTAAGAGTTCTTCGTCTTCTTTGGAATCCAACCATGATGAAACCCCTTGTTGGAGAAGACTTGGACTTCATCAACTCGTTGACTTGGATTTTGCAACTTCACAATGTCAAGATGGTAAATGAAGTAATGCCCCTTTTGAAATTGACAATTGAAGTTGTGGATTCAACCCTGTTTGGAAGTTTAAGGCTTGAATTTTTTGAAGAAATGGTAAGGGTATTGAAAAGGAGAGAACTTTCTCAACAGGCTATTAAGTCTGTTTTGCATGTTCTAATAGAAGCTTGCACATTGGGTAGAAACAGAAACAGGATAGTGGAAGCAGGTGCAGTAACAGAACTCATAGAACTTGAGCTTGAAAAACCAGAGAAGAACATAACTGAGCTTATATTTAACCTTTTGGCATATCTGTGCTCATGTGCTGATGGAAGAGCACAGGTTATTGGGCATGCAGCGGGAATTGCTATGATTTCAAAGAGGATTCTGAGGGTTTCTCCTGCCACTGATGACAGAGCAATTCAAATATTTTGTGTGATTGCTAAGTATTCAGCATCAAAGGGGGTGATTTTGGAGATGTTGAGGGTTGGAGCAGTGTCAAAGCTTTGCATGGTGATGCAAGCAGATTGTGGTTCATATTTGAAAGAAAAAGCAAGAGATCTCCTTAGGTTACACTCCACAGCTTGGAATAATTCCCCTTGCATACAAGTGTATTTGTTAACTAGACACCAAAGGTGA 1149 0.4064 MKDPVTAITGITYDRESIEKWLLRAKHCVCPVTKQPLSRNPESLTPNHTLRRLIQAWCSSKGVDRIPTPKAPLDKIQIQKLVKDLDVPHCYQTTLVKMHDLATQSERNRTCMAEAGVAKAMVMVIKNNFKEGKTTCLEEALRVLRLLWNPTMMKPLVGEDLDFINSLTWILQLHNVKMVNEVMPLLKLTIEVVDSTLFGSLRLEFFEEMVRVLKRRELSQQAIKSVLHVLIEACTLGRNRNRIVEAGAVTELIELELEKPEKNITELIFNLLAYLCSCADGRAQVIGHAAGIAMISKRILRVSPATDDRAIQIFCVIAKYSASKGVILEMLRVGAVSKLCMVMQADCGSYLKEKARDLLRLHSTAWNNSPCIQVYLLTRHQR 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi169g00116 382 Gene3D - 94 368 IPR011989 -
Sebi169g00116 382 PANTHER WDSAM1 PROTEIN 1 373 IPR045185 GO:0061630
Sebi169g00116 382 ProSiteProfiles U-box domain profile. 1 64 IPR003613 GO:0004842|GO:0016567
Sebi169g00116 382 Pfam U-box domain 1 61 IPR003613 GO:0004842|GO:0016567
Sebi169g00116 382 SUPERFAMILY ARM repeat 100 349 IPR016024 -
Sebi169g00116 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 64 IPR013083 -
Sebi169g00116 382 SMART Ubox_2 1 57 IPR003613 GO:0004842|GO:0016567
Sebi169g00116 382 SUPERFAMILY RING/U-box 1 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi169g00116 Sebi-Chr169 1419678 1420826 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi169g00116 1 372 U-box Gene Family AT2G35930 40.052 2.37e-91 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi169g00116 - - gmx:100787426 541.576