Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi169g00112 ATGATGGGTAGAAAATTGGTTCATGGTCAATTTGGGACAACGTACCTTTGCACTCACAAGGTAACAGGTGGTAGGTGCGCTTGCAAGTTTATTCTGAAATGGAAGCTTCTGTGCAAAGAGGATTACGACGATGTTTGGAGGGAGATTCAGATAATGCACCACTTGTCTGAACACCCCCACGTGGTGCGAATCAAAGGAACCTATGAGGATTCCTATGCTTTTCATCTGATTATGGAGCTGGCCTTGCTCTGCCCAAACCTCAACCCCATCATCAGATTCAGAACCACCTTACCTATCCCAACACCCTCTTCTCTTCTCCTGCAACATTTTTCCTCTTCCAAAGAACACTCTTTTACCTTCAATTATCTTGTAAAAAATTGTGGGTTCTCCCCAGAAACGGCTTCCAGACTCTCTAACCGAGTTCGTCTCAACAACTCAGACAGACCCGACTCGGTCCTTGCCTTGTTCAGAAGCCACGGATTCTCAAACGCTCAGTTATGTGGGATCATCCGAACCAGCCCAAATCTTCTTACTTACGATCCCAACAAGACCATTCTTCCCAAGTTCAATTTCCTTCTCTCAAAGGGTGCTTCAAGTTCTGACCTTGTGCACATCGTGACCAAGAATCCCACAGTCCTGCATTCAAGCTTGGAGAATACCATTTCCCCGTGTTATGATTTGGTCAAACGATTCAGGCTTTCTGATGAGTCCACTTTGGTCTCTATAAAAGCTTCCGCTTGCTTGATTTATTCTAAGAACCTAACACAAAATATTCAACTGCTACTTGACAATGGGGTCCCTGAATCAAAGGTTGCTCTTTTTTTTCGTGTTCGTAATGGGAGCTACACAATCACTGAGCACCATGCTCTGTTTAAGAAGGCAGTGGAAGAAGTAAAGGAATTGGGAATCAACCCCAACAAATCAATTTTCATTGTAGCAGTGCGTGCTAAGATTAAGAAAGAATGCGTGTGGGAAAGGAGGATCAATTTGTATAAAAAATGGGGTTGGTCTGAAGAAATTATTGTTTCAGCATTTGTGAGGTATCCATGGTGCATGCTGGCATATGATAATAAAATTGAGGCAGTGATGGAGTTTTGGGTCAACCACATGGGTTGGAGTTCTTTGATCCTCGCCAAACACCCATTACTAATTACGTTGAGTTTGGAGAAAAGAGTTATTCCAAGGGCTCTTGTCTTGCAATTTCTTCAAGCCAGAGGTTTGATTAAGGATGCAAAATCCATCAGTTATTATACAGTTAACGAGAAGAAGTTCTTGCAGAAATTTGTAAATTGCTTCGAGGAGGAAGCTTCTCAGCTGTTGAAGTTGTATGAAGGGAAAAATTATCTTCCAAGATAA 1356 0.424 MMGRKLVHGQFGTTYLCTHKVTGGRCACKFILKWKLLCKEDYDDVWREIQIMHHLSEHPHVVRIKGTYEDSYAFHLIMELALLCPNLNPIIRFRTTLPIPTPSSLLLQHFSSSKEHSFTFNYLVKNCGFSPETASRLSNRVRLNNSDRPDSVLALFRSHGFSNAQLCGIIRTSPNLLTYDPNKTILPKFNFLLSKGASSSDLVHIVTKNPTVLHSSLENTISPCYDLVKRFRLSDESTLVSIKASACLIYSKNLTQNIQLLLDNGVPESKVALFFRVRNGSYTITEHHALFKKAVEEVKELGINPNKSIFIVAVRAKIKKECVWERRINLYKKWGWSEEIIVSAFVRYPWCMLAYDNKIEAVMEFWVNHMGWSSLILAKHPLLITLSLEKRVIPRALVLQFLQARGLIKDAKSISYYTVNEKKFLQKFVNCFEEEASQLLKLYEGKNYLPR 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi169g00112 451 SMART mt_12 374 408 IPR003690 GO:0003690|GO:0006355
Sebi169g00112 451 SMART mt_12 167 198 IPR003690 GO:0003690|GO:0006355
Sebi169g00112 451 SMART mt_12 203 234 IPR003690 GO:0003690|GO:0006355
Sebi169g00112 451 SMART mt_12 238 267 IPR003690 GO:0003690|GO:0006355
Sebi169g00112 451 SMART mt_12 342 373 IPR003690 GO:0003690|GO:0006355
Sebi169g00112 451 PANTHER CGI-12 PROTEIN-RELATED 114 434 IPR003690 GO:0003690|GO:0006355
Sebi169g00112 451 Pfam mTERF 153 349 IPR003690 GO:0003690|GO:0006355
Sebi169g00112 451 Pfam mTERF 252 424 IPR003690 GO:0003690|GO:0006355
Sebi169g00112 451 Gene3D Phosphorylase Kinase; domain 1 1 81 - -
Sebi169g00112 451 SUPERFAMILY Protein kinase-like (PK-like) 3 105 IPR011009 -
Sebi169g00112 451 FunFam Mitochondrial transcription termination factor-like 217 436 - -
Sebi169g00112 451 Gene3D Transcription termination factor 3, mitochondrial 241 442 IPR038538 -
Sebi169g00112 451 SMART serkin_6 1 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi169g00112 451 Pfam Protein kinase domain 4 81 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi169g00112 Sebi-Chr169 1369099 1371440 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi169g00112 1 80 EF-hand Containing Proteins AT1G35670 70.000 2.11e-32 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Sebi169g00112 mTERF 2.1e-22 No_clan
TR mTERF Sebi169g00112 mTERF 2.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi169g00112 K15031 - gmx:102663105 402.905