Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi169g00107 ATGTCTACCTCTAGAACCTCAGATTCTTTCCTCAAAGGATATGAACCCAATCAAACCCAAATGAATTTATCTCTTCTTCAACGCAATACATCACCTTCTGGTGACAGAAGAGGCAGAAGAAAGCAAACAGAACCTGGAAAGTTTCTTGGGGTAAGGAGACGCCCTTGGGGTAGATATGCTGCTGAAATCAGAGACCCTACAACTAAAGAAAGACATTGGCTTGGAACATTTGACACTGCTCATGAAGCAGCTCTTGCTTATGACAGAGCTGCTCTGTCCATGAAAGGTAGCCAAGCAAGAACCAACTTCATTTACTCTGATGATACTAATTTTCACAATGTTCTTCTTACTCCTATGGATATTCAAGCTCTTTTACCACCTTCACAGTTCCTCACTAACACTCAGAGTCAGAACACACATCAAACCAATCAAAATAGCCTGTCTCAGCTTGATACTTCCCACATTGAAAACCCCTCTCACTTGAACAATGAAACTGCATATGGGTCACCTCATGATCATGATAATTTCTTTTTCTCCAATGATTCTAACTCAGGCTATCTGGAATGCATAGTTCCTGGTAATTGTTTCAGACCTTCTTCCAGTACTTCAAACTTCAGGAAGAGCAATGTTAGTGCTTCAAGTGACCAAAAGGTTAGCACAGTTAACACAAACTCCATGCAGGGTCAATCACAATCATATTTTGACAACACTGCATTCTCTCAAGAACATTTCAACATGCAGACAGTGGCCTCTAACTATGCAGATTTTTCTTACCCAAGTCAAGGATTATGGGATTGCAATTCCAATGAACTTTCAGCTATGTTTAACAATCCATCAAGGAATGAAGATGGATGTATGTATGCATTATGTCCCATCAATGACAGTCCAAGCTATGGGCTAATGACTGAGGCTGTTTCTTCAACTACCTCTTCTCCATCATTTCCTCCATTTGGTGATGTTGACTTGGGATACTCACTCTTCTGA 984 0.4055 MSTSRTSDSFLKGYEPNQTQMNLSLLQRNTSPSGDRRGRRKQTEPGKFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAHEAALAYDRAALSMKGSQARTNFIYSDDTNFHNVLLTPMDIQALLPPSQFLTNTQSQNTHQTNQNSLSQLDTSHIENPSHLNNETAYGSPHDHDNFFFSNDSNSGYLECIVPGNCFRPSSSTSNFRKSNVSASSDQKVSTVNTNSMQGQSQSYFDNTAFSQEHFNMQTVASNYADFSYPSQGLWDCNSNELSAMFNNPSRNEDGCMYALCPINDSPSYGLMTEAVSSTTSSPSFPPFGDVDLGYSLF 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi169g00107 327 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 33 229 - -
Sebi169g00107 327 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
Sebi169g00107 327 CDD AP2 47 103 IPR001471 GO:0003700|GO:0006355
Sebi169g00107 327 MobiDBLite consensus disorder prediction 1 32 - -
Sebi169g00107 327 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Sebi169g00107 327 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Sebi169g00107 327 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Sebi169g00107 327 FunFam Ethylene-responsive transcription factor 2 47 105 - -
Sebi169g00107 327 MobiDBLite consensus disorder prediction 1 46 - -
Sebi169g00107 327 Gene3D AP2/ERF domain 47 105 IPR036955 GO:0003700|GO:0006355
Sebi169g00107 327 Pfam AP2 domain 48 96 IPR001471 GO:0003700|GO:0006355
Sebi169g00107 327 SUPERFAMILY DNA-binding domain 47 105 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi169g00107 Sebi-Chr169 1333459 1334442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi169g00107 1 320 AP2-EREBP Transcription Factor Family AT5G18560 40.379 5.48e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sebi169g00107 AP2 2.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi169g00107 - - gmx:100812047 405.986