Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi169g00106 ATGTTTGTGGTTGATAATCAGGGGGCACAACCTTGCACTCATTATGCACAGCGTGGAGTATGTAAGTTTGGTCCTGCATGCAAATTTGATCATTCTATGACTTCACTGAGTTATAGTCCATCTGCTTCTTCCCTTGCTGACATGCCAGTTGCACCCTATCCCGTGGGTTCATCAATTGGTACTCTTGCTCCGTCATCTTCATCATCAGAGTTGCAGCCTGAACTTACCACAGGATCCAACAAGGAGTCCATTCCATCCAGAATATCTTCATCAGTGAGCAGCACATTGACAGGATCAGTTGGCTTGACTTTGTCTACTGGTGGACCTGTTTCTCAATCAAGCACTCAACCATCTACTCAGAGTTCCAGTCCTTTAGCAGATGCCAATACCACAAGTAGCAATGTCTCTCACAACTCAAGCTAA 423 0.4515 MFVVDNQGAQPCTHYAQRGVCKFGPACKFDHSMTSLSYSPSASSLADMPVAPYPVGSSIGTLAPSSSSSELQPELTTGSNKESIPSRISSSVSSTLTGSVGLTLSTGGPVSQSSTQPSTQSSSPLADANTTSSNVSHNSS 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi169g00106 140 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 10 33 IPR000571 GO:0046872
Sebi169g00106 140 ProSiteProfiles Zinc finger C3H1-type profile. 6 34 IPR000571 GO:0046872
Sebi169g00106 140 MobiDBLite consensus disorder prediction 36 140 - -
Sebi169g00106 140 Gene3D - 4 77 - -
Sebi169g00106 140 SUPERFAMILY CCCH zinc finger 9 36 IPR036855 GO:0046872
Sebi169g00106 140 SMART c3hfinal6 6 33 IPR000571 GO:0046872
Sebi169g00106 140 MobiDBLite consensus disorder prediction 59 140 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi169g00106 8 93 C2H2 Transcription Factor Family AT5G18550 53.608 1.79e-18 78.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sebi169g00106 zf-CCCH 3e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi169g00106 - - vum:124824975 149.828