Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi169g00105 ATGGAGCAGCAGTACGGCCGGTCCAGTAAAGGGTCACGGTCTGATCCGTCGCTGGAATGGACGGGACCCGGGGTTGAAACCGGGCTCGAAGAGCCTATGTGGCAATTGGGGTTGGGTGCTGCCGAGGAATCGTACCCGCAACGCCCCGATGAGGCTGATTGTACCTACTATTTAAGAACCGGCTTCTGTGGCTTCGGCTCGCGGTGTCGGTTCAACCATCCTCGTGACCGTGGCGCGGTTATTGGAGCTGCGAGGACTGCAGGGGACTATCCAGAACGAGCAGGCCAGCCTGTGTGCCAGTTTTATATGAGGACGGGATCATGCAAATTTGGTGCGTCTTGCAAGTACCACCACCCTAGGCAGGCAGGAGGCACTGCTACCCCTGTGTCACTAAATTATTATGGATATCCATTGCGACCGGGTGAAAAAGAGTGTTCCTATTATGTGAAAACGGGACAATGCAAGTTTGGTGCAACTTGTAAATTCCATCATCCACTTCCTGCTAGTGGTCAAATTCAAACACCATCACATGTTCCCCCAGTTTCGCCTTTACCTGTGCAGGTACCTTCACCAATGTATCCAACCATACAACCTCCATCCGGTCCTTCATCACAACAAATTGGTGTACTGGTTGCAAGGCCGCCTCTAATGCCTGGTTCGTTTGTCCAGAGCCCCTATGGGCCTGTGGTAGTGTCCCCTACAATGGTCCCTATGTCTGGCTGGGGTCCTTATCAGGCTCCTGCAACAAACCCTGTACTTCCTTCTAGTACTCCATCTAATGTTGGCTCAACACAGCTTTATGGGATAACTCAGCTACCTTCATCAGCAGCTGCATATACTGGATCTTATCAACCTTCTGGTTCCTCAGGTGGTCCTTCAAGCAGTAGCCCGAAGGAGCAGTCATATAGGTATCACCACCCACCAGACATGAATGCACCAAAAGTGAATGTGGTCCTTAGCCCTGCAGGTCTTCCATTGCGTCCGGACTTGAAACTCGCTTTACTGGAATTCAAGTTTAGATTTCAATTCATCATTGAGAACAAATCATAG 1050 0.5076 MEQQYGRSSKGSRSDPSLEWTGPGVETGLEEPMWQLGLGAAEESYPQRPDEADCTYYLRTGFCGFGSRCRFNHPRDRGAVIGAARTAGDYPERAGQPVCQFYMRTGSCKFGASCKYHHPRQAGGTATPVSLNYYGYPLRPGEKECSYYVKTGQCKFGATCKFHHPLPASGQIQTPSHVPPVSPLPVQVPSPMYPTIQPPSGPSSQQIGVLVARPPLMPGSFVQSPYGPVVVSPTMVPMSGWGPYQAPATNPVLPSSTPSNVGSTQLYGITQLPSSAAAYTGSYQPSGSSGGPSSSSPKEQSYRYHHPPDMNAPKVNVVLSPAGLPLRPDLKLALLEFKFRFQFIIENKS 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi169g00105 349 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Sebi169g00105 349 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Sebi169g00105 349 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Sebi169g00105 349 Gene3D - 40 121 - -
Sebi169g00105 349 Gene3D - 122 174 - -
Sebi169g00105 349 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Sebi169g00105 349 MobiDBLite consensus disorder prediction 278 309 - -
Sebi169g00105 349 MobiDBLite consensus disorder prediction 1 27 - -
Sebi169g00105 349 PANTHER PROTEIN PHOSPHATASE RELATED 31 329 - -
Sebi169g00105 349 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Sebi169g00105 349 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Sebi169g00105 349 SUPERFAMILY CCCH zinc finger 141 167 IPR036855 GO:0046872
Sebi169g00105 349 FunFam Zinc finger nuclease 2 47 124 - -
Sebi169g00105 349 SUPERFAMILY CCCH zinc finger 50 76 IPR036855 GO:0046872
Sebi169g00105 349 MobiDBLite consensus disorder prediction 1 16 - -
Sebi169g00105 349 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 165 IPR000571 GO:0046872
Sebi169g00105 349 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 50 75 IPR000571 GO:0046872
Sebi169g00105 349 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Sebi169g00105 349 MobiDBLite consensus disorder prediction 278 301 - -
Sebi169g00105 349 SUPERFAMILY CCCH zinc finger 96 121 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi169g00105 Sebi-Chr169 1318563 1320607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi169g00105 1 328 C2H2 Transcription Factor Family AT5G18550 51.934 1.56e-109 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sebi169g00105 zf-CCCH 2.9e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi169g00105 - - gmx:100812433 507.294