Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi169g00059 ATGCAGGTTAGGTGCCTCGTGGCCATGGCACAAGATGAAGGACACAAACCCACAGTCGAGGAGAAAGTTCCCTTCTATAAGCTTTTCACTTTAGCAGACCACCTTGACGTCACTTTGATGATCATTGGTGTCATTTGTGCCATGGCTAATGGGTTAACACAACCTCTCATGACCCTCATTTTTGGGAAGCTTATCAATACCTTTGGCACCACCGATCCTTCCCACATTGTCAACCAAGTTTCTAAGGTTGCATTATTGTTCATTTATTTGGCCATTGGATCTGGAATAGCGTCATTTCTACAGGTATCATGTTGGATGGTAACAGGAGAAAGACAAGCAGCACGGATTCGTAACTTGCACTTGAAAACTATATTAAAGCAAGACATTGCCTACTTTGACACTGAAACAACAACTGGAGAGGTAATTGGGAGAATGTCTGGTGATACCATTCTCATTCAAGATGCCATGGGAGAAAAGGTTGGGAAGTTTATACAACTTGTTTCAACCTTTTTTGGTGGCTTTGTGATTGCCTTTACAAAAGGGTGGCAACTGTGCATAGTTTTGCTTGCATGTATTCCTTGTATTGTCATTGTTGGTGGAATTATGTCCATGATGATGGCAAAAATGTCAAGCCGTGGCCAAGCTGCTTATGCAGAAGCTGGAAATGTTGTTCAACAAACGGTTGGAGCCATTAGAACAGTTGCCTCTTTTACTGGTGAGGAAAAAGCAATTGAAAAATACCATAACAAGTTAAAAATTGCTTATAAAACTACAGTTCAACAAGGGTTGGCCTCAGGGTTAGGAATGGGAGTACTTTTGCTAATTGTCTTTAGCACCTATGGACTTGCTATGTGGTATGGCTCCAAACTGATCATTGAGAAAGGATACAATGGTGGAGATGTTTTTAATATTATCATATCAATTAATACGGGTGGAATGTCACTTGGTCAAACGACCCCATGCCTAAATGCATTTGCAGCAGGCCAAGTAGCAGCATATAAGATGTTTGAGACAATTAAACGAAAACCAAAAATTGATGCTTATGACACTAATGGTGTTATCTTGGAAGACATAAAGGGGGATATAGAACTTAAGGATGTTTACTTCAAATACCCTGCAAGGCCAGATGTGCAAATCTTTGTTGGATTCTCATTCTATATTCCAAGTGGCACAACTGCTGCTTTAGTGGGTCAAAGTGGTAGTGGGAAGTCAACTATAATCAGTTTATTAGAAAGATTCTATGACCCTGATGCTGGAGAAGTACTTATTGATGGTGTTAATTTAAAGAATTTTCAAGTTAGATGGATAAGGGAACAAATTGGGCTTGTTGGTCAAGAACCTGTCCTATTTACAGCTAGTATCAAGGAGAACATTTCATATGGGAAAGAAGGTGCAACAGATGAGGAGATAACATCAGCAATAACACTTGCCAATGCCAAAAAGTTCATCGATAAGCTGCCTCAGGGCCTTGACACAATGGTAGGAGGGCATGGGACTCAACTTTCTGGTGGGCAAAAGCAAAGAATTGCAATTGCAAGGGCAATTTTGAAGAACCCAAAAATCCTTCTTCTTGATGAAGCAACTAGTGCTTTGGATGCTGAGTCAGAACATATTGTTCAAGAAGCATTGGAAAGAGTTATGTCAAAAAGGACTACTGTTGTTGTTGCACATCGTTTGACAACCATTAGAAATGCTGATACCATAGCAGTGGTTCATCAGGGGAAAATTGTGGAAAAAGGAACTCATGATGAGTTAATCAAGGATCCTGATGGTGCTTATTCTCAACTCATTCGTCTACAAGAAAGATCCATGGAAGCAGAAGGAAGCCATAATTCTGAAGCAAATGAGTCAAAGAAAAGTTTTAATTTAGATAATCAAATGACTAGATCTTCCACCCAAAGAACATCCTTTGCAAAATCAATAAGCCAAGGTTCATCAGGCAGTAGACACTCTTTCTCACATGGCTTTACTCTTCCTTATCAAATTGATGCAAATGAGTCTGGTGAAAGAGCTAATGGAGATGTTGAAAATAGTGAACTTGATAATGTGAAACATCAAAAGGGTTCTGTTAAACGTTTAGCCAAGTTAAATAAGCCTGAGGTTCCTGTATTACTACTTGGATCCATTGCTGCAGCAGTACATGGTGTTATTCTTCCTGTATTTGGCCTCCTACTTTCATCAGCTATTAATACATTCTATGAACCTGCAGAACAGCTTAGAAAAGATTCTAAGTTTTGGTCACTTGTAGATGTTGGTTTGGGTATAGTTACTCTAGTGGCTATACCAATGCAGAACTACTTATTTGGGATTGCTGGTGGAAAACTTATAGAAAGAATTCGTTTATTAACATTTAAAAAGGTTGTGCACCAAGAAATTAGTTGGTTTGATCAACCTTCAAATTCAAGGTATATCATGATTATGAAAGAGAAAATCATTGTCACATCACATGTTAATTCCTTCAACTCATCTAACTCAAAAGAAATAAACATCCTTGTAGTGGTGCAGTTAGTGCAAGTTCTGGCTGTGTCACCCTTGTTGCTCATACAAGGATACCTTCAAACCAAGTTTCTAAAAGGATTCAGTGCAGACGCAAAGGCGAAGTATGAAGAGGCTAGTCAAGTGGCAAATGATGCTGTTGGTAGCATCAGAACTGTTGCATCATTTTGTGCTGAACCAAAGGTGATGGATATGTATCAGAAGAAATGTTTAGAACCAAAAAAACAAGGTGTTCGGTTAGGGCTTGTTAGTGGTGCAGGATTAGGTTTCTCCTTTTTTGCTTTATATTGCACAAATGCCTTTTGTTTCTACATAGGAGCTGTCCTTGTGCAACACGGGAAGGCAACTTTTGGAGAGGTTTTCAAGGTTTTCTTTTCTTTAACGGTTACAGCTGTCGGTGTTTCCCAAACTAGTGCCTTAGCACCAGATACTAACAAGGCCAAAGATTCTGCAGCTTCAATATTTCAAATTCTTGACAGCAAACCAATGATTGATTCCAGTAGTAATGAGGGCATAACACTAAAAACTGTAAAAGGTGACATTGAACTTCAACAAGTCAGCTTTAGTTATCCAACAAGACCCAATATTCAAATTTTCAAAGATTTGTGTCTAAGAATTCCACCTGGAAAGCAAATGGGTTTGGTTGGTCAAGAGCCTATTCTTTTCAATGAAAGCATTCGCTCAAACATAGCTTATGGCAAAGAGGGAGGTGCTACAGAGGATGAGATAATTGCAGCAGCTCAAGCAGCCAATGCACACAGGTTCATAAGTTCTCTTCCAAATGGTTATGACACCTCTGTTGGAGAAAGAGGCACACAATTGTCAGGGGGACAAAAGCAACGTATAGCCATTGCAAGAGCCATATTGAAAGATCCCAAAATCCTTTTGCTTGATGAGGCAACAAGTGCACTTGATGCTGAGTCAGAGCGTGTAGTTCAAGAGGCTCTAGATAGAGTGAGTGTGAACAGAACTACTGTTGTGGTAGCTCATCGTCTTGCAACAATTAAAGGTGCTGACATTATAGCTGTAGTGAAAAATGGGGTGATTGTTGAGAAGGGAGGACATGATGCTTTGATGAAGATTGATGGTGGAGTTTATGCTTCATTGGTAGCTCTCCATATTAGTGCATCATAG 3630 0.3956 MQVRCLVAMAQDEGHKPTVEEKVPFYKLFTLADHLDVTLMIIGVICAMANGLTQPLMTLIFGKLINTFGTTDPSHIVNQVSKVALLFIYLAIGSGIASFLQVSCWMVTGERQAARIRNLHLKTILKQDIAYFDTETTTGEVIGRMSGDTILIQDAMGEKVGKFIQLVSTFFGGFVIAFTKGWQLCIVLLACIPCIVIVGGIMSMMMAKMSSRGQAAYAEAGNVVQQTVGAIRTVASFTGEEKAIEKYHNKLKIAYKTTVQQGLASGLGMGVLLLIVFSTYGLAMWYGSKLIIEKGYNGGDVFNIIISINTGGMSLGQTTPCLNAFAAGQVAAYKMFETIKRKPKIDAYDTNGVILEDIKGDIELKDVYFKYPARPDVQIFVGFSFYIPSGTTAALVGQSGSGKSTIISLLERFYDPDAGEVLIDGVNLKNFQVRWIREQIGLVGQEPVLFTASIKENISYGKEGATDEEITSAITLANAKKFIDKLPQGLDTMVGGHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESEHIVQEALERVMSKRTTVVVAHRLTTIRNADTIAVVHQGKIVEKGTHDELIKDPDGAYSQLIRLQERSMEAEGSHNSEANESKKSFNLDNQMTRSSTQRTSFAKSISQGSSGSRHSFSHGFTLPYQIDANESGERANGDVENSELDNVKHQKGSVKRLAKLNKPEVPVLLLGSIAAAVHGVILPVFGLLLSSAINTFYEPAEQLRKDSKFWSLVDVGLGIVTLVAIPMQNYLFGIAGGKLIERIRLLTFKKVVHQEISWFDQPSNSRYIMIMKEKIIVTSHVNSFNSSNSKEINILVVVQLVQVLAVSPLLLIQGYLQTKFLKGFSADAKAKYEEASQVANDAVGSIRTVASFCAEPKVMDMYQKKCLEPKKQGVRLGLVSGAGLGFSFFALYCTNAFCFYIGAVLVQHGKATFGEVFKVFFSLTVTAVGVSQTSALAPDTNKAKDSAASIFQILDSKPMIDSSSNEGITLKTVKGDIELQQVSFSYPTRPNIQIFKDLCLRIPPGKQMGLVGQEPILFNESIRSNIAYGKEGGATEDEIIAAAQAANAHRFISSLPNGYDTSVGERGTQLSGGQKQRIAIARAILKDPKILLLDEATSALDAESERVVQEALDRVSVNRTTVVVAHRLATIKGADIIAVVKNGVIVEKGGHDALMKIDGGVYASLVALHISAS 1209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi169g00059 1209 PANTHER ABC TRANSPORTER B FAMILY 10 608 IPR039421 -
Sebi169g00059 1209 FunFam ABC transporter B family member 9 27 357 - -
Sebi169g00059 1209 SMART AAA_5 389 575 IPR003593 GO:0016887
Sebi169g00059 1209 SMART AAA_5 908 1186 IPR003593 GO:0016887
Sebi169g00059 1209 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1002 1203 IPR027417 -
Sebi169g00059 1209 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 705 978 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi169g00059 1209 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 961 1203 IPR003439 GO:0005524
Sebi169g00059 1209 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 41 327 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi169g00059 1209 Gene3D ABC transporter type 1, transmembrane domain 27 623 IPR036640 GO:0005524|GO:0016020
Sebi169g00059 1209 ProSitePatterns ABC transporters family signature. 1106 1120 IPR017871 GO:0005524|GO:0016887
Sebi169g00059 1209 FunFam ABC transporter B family member 28 1042 1207 - -
Sebi169g00059 1209 Gene3D - 1003 1046 IPR027417 -
Sebi169g00059 1209 MobiDBLite consensus disorder prediction 603 653 - -
Sebi169g00059 1209 SUPERFAMILY ABC transporter transmembrane region 687 994 IPR036640 GO:0005524|GO:0016020
Sebi169g00059 1209 MobiDBLite consensus disorder prediction 615 653 - -
Sebi169g00059 1209 FunFam ABC transporter B family member 1 352 601 - -
Sebi169g00059 1209 CDD ABC_MTABC3_MDL1_MDL2 362 600 - -
Sebi169g00059 1209 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 362 598 IPR003439 GO:0005524
Sebi169g00059 1209 Pfam ABC transporter 1040 1134 IPR003439 GO:0005524
Sebi169g00059 1209 Pfam ABC transporter transmembrane region 705 800 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi169g00059 1209 Pfam ABC transporter transmembrane region 839 963 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi169g00059 1209 Pfam ABC transporter transmembrane region 40 311 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi169g00059 1209 Pfam ABC transporter 383 529 IPR003439 GO:0005524
Sebi169g00059 1209 CDD ABC_6TM_Pgp_ABCB1_D1_like 40 335 - -
Sebi169g00059 1209 SUPERFAMILY ABC transporter transmembrane region 27 346 IPR036640 GO:0005524|GO:0016020
Sebi169g00059 1209 ProSitePatterns ABC transporters family signature. 501 515 IPR017871 GO:0005524|GO:0016887
Sebi169g00059 1209 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 351 600 IPR027417 -
Sebi169g00059 1209 Gene3D - 352 601 IPR027417 -
Sebi169g00059 1209 Gene3D - 1047 1204 IPR027417 -
Sebi169g00059 1209 Gene3D ABC transporter type 1, transmembrane domain 669 1001 IPR036640 GO:0005524|GO:0016020
Sebi169g00059 1209 CDD ABC_6TM_Pgp_ABCB1_D2_like 694 996 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi169g00059 Sebi-Chr169 720457 726042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi169g00059 706 1208 Calmodulin-binding Proteins AT2G36910 34.615 3.07e-87 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi169g00059 K05658 - gmx:100792531 1861.27