Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi169g00038 ATGGATGATAATTCAGCAAGCGACGGAAATAACGCAGTGGTTTTCCATGTAAACGGTGATGATGCCTCCCAAAAGTCTGGAAAAGCAGACATCAAAGACTGTGTGCCTCTTTTGCAGAAGTTGGTAGCAGAGGCGGTGGGCACGTACATCATGATATTTGCAGGCTGTGGTGCGGTGATTGTGAACCTTAACAACGAGAGAGTGCTAACACTTTCTGGAATTGCAATTGTTTGGGGACTTACGGTTATGGTATTAGTTTACTCTCTTGGTCATATCTCTGGTGCTCATTTCAACCCAGCTGTCACCCTTGCTCTTTCTTCCACCAAAAGGTTTCCTTTCAAACAGGTACCAGGTTATATTATAAGTCAGGTGGTTGGATCCACACTTGCAAGTGGAACCCTGAGACTGATATTCAGGGGCAAGGATGACCATTTTGTAGGAACACTCCCCGCTGGTTCTAACCTGCAAGCTTTTGTGGTCGAATTCATTATCACTTTCTACCTCATGTTCGTTATTTCAGCAGTAGCCACCGATAACAGAGCCTTTGGTGAGTTGGCTGGGCTTGCAGTTGGGTCTACGGTACTGCTAAATGTGTTGTTGGCCGGGCCAATCACTGGAGCATCATTGAATCCAGCAAGAAGCTTAGGGCCTGCTGTTGTGCACCATGAGTACAGAGCATTGTGGATATATTTGGTATCACCAGTTCTTGGAGCTTTGGCTGGAACATGGGCCTACAATTTCATCAGGTGCACCAAAAAGCAGTGCGGGTGCTGA 774 0.4651 MDDNSASDGNNAVVFHVNGDDASQKSGKADIKDCVPLLQKLVAEAVGTYIMIFAGCGAVIVNLNNERVLTLSGIAIVWGLTVMVLVYSLGHISGAHFNPAVTLALSSTKRFPFKQVPGYIISQVVGSTLASGTLRLIFRGKDDHFVGTLPAGSNLQAFVVEFIITFYLMFVISAVATDNRAFGELAGLAVGSTVLLNVLLAGPITGASLNPARSLGPAVVHHEYRALWIYLVSPVLGALAGTWAYNFIRCTKKQCGC 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi169g00038 257 ProSitePatterns MIP family signature. 96 104 IPR022357 -
Sebi169g00038 257 CDD MIP 39 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi169g00038 257 Gene3D Glycerol uptake facilitator protein. 3 255 IPR023271 -
Sebi169g00038 257 Pfam Major intrinsic protein 36 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi169g00038 257 NCBIfam MIP family channel protein 43 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi169g00038 257 SUPERFAMILY Aquaporin-like 36 252 IPR023271 -
Sebi169g00038 257 PRINTS Major intrinsic protein family signature 115 134 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi169g00038 257 PRINTS Major intrinsic protein family signature 160 178 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi169g00038 257 PRINTS Major intrinsic protein family signature 78 102 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi169g00038 257 PRINTS Major intrinsic protein family signature 191 213 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi169g00038 257 PRINTS Major intrinsic protein family signature 228 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi169g00038 257 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi169g00038 257 PANTHER AQUAPORIN NIP2-1 31 253 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi169g00038 Sebi-Chr169 405058 406747 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi169g00038 35 202 Major Intrinsic Protein MIP AT4G18910 74.286 4.21e-88 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi169g00038 K09874 - gmx:100812577 392.119