Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi169g00028 ATGGCTTCAGGGGCAATTTTTTCGTCTTTGCGGCGGAGAAGGTCGCCGACGTTGGAAGCGTTTCTCGCCCCAGTTGACTTGAGCGACGTCGCTTTGATACAGACCCTTGTATCGGTGGCCAACGAGCTTGTGTCGTGCTTTTCCAAGTGTCCGTTCTTTCAGCGCAAGAACTCGCGGTCTCTGATCCGAAAAGTGGAGAACCATTCTATTTCCGGTCACTTCCATGATTTGAACCAAGAGATTTCGACCCTTTTGGATGTTTTTCCGGTTAAGGATATTGGGTTGAGTAAGGATGTTAGGGAACAGGTTGAGTTGTTGCAGAAGCAGTCAAGGAGGGCTAAGTTGTTTATAGACATGAAGGATGATGCTCTTAGGATCCGCTTCTTTTCGTTTCTTGATGAGTTTGAGAATGGGCGGATTCCTGATTCAGCTGAATTGCGATCTTTCTATGTAGAAAATTGCGGATTCTGGATGCTGCAAGTTGTAGAGATGAAATTGATGCTTTGGAGGAGCAGATTGTTAATCATGAGGGACGATGAGCTTGACTTGGAAAATGGAGGAGGTCAAACTTATGATAGGAGTTCCATTTCAAGGTGGATGGAAGAAGGGCATACAACTTGCCCAAAGACAGGACAAATGCTTGCCCATAATCGTCTTGTTCCTAATCGTGCTCTGAGGAATTTGATTGTGCAGTGGTGTGCTGCTCATGGAGTTCCCCTTGACCCACCAGAGGTCATGGATCCTATGGGTGAATCCTTTGCATCTGCTTGTCCAACCAATGCTGCCCTTGAAGCCAACAGAGCCACTGCAGCACTTCTCATTCAACAGCTAGCAAATGGGTCACAAACTGGAAAGACTATCGCTGCCCGTGAGATACGATTGCTAGCAAAAACTGGTAAAGAAAACCGTGCTTTCATTGCAGAAGCAGGGGCAATTCCTCATCTTAGGAACTTGCTTTCATCACCGAATGCTGTTGCTCAGGAGAATTCAGTAACTGCATTGCTCAACCTATCCATTTTTGACAAGAACAAAAGTCGAATTATGGATGAGGAAGGCTGTCTAGGATCAATTGTTGATGTGTTGAGATTTGGGCACACAACAGAAGCAAGGGAAAATGCTGCTGCAACATTGTTCAGCCTATCAGCCGTCCATGACTATAAGAAAATAATCGCAGATAAGACAGGAGCTGTTGAAGCACTAGCAGGGCTCTTGCAAGAGGGAACTCCAAGAGGAAAGAAGGATGCTGTAACAGCTTTGTTTAATCTTTCCACACACACTGAGAATTGTGTTAGAATGATAGAGGCAGGGGCAGTATCAGCTCTCGTTGGGGCTTTGGGGAATGAAGGAGTTGCTGAGGAAGCAGCAGGTGCCCTGGCCTTGATTGTTCGACAGCCAGTTGGGGCCAAAGCAGTAGTGAGCGAGGAAGAAGCAGTAGCTGGATTGATAGGAATGATGCGATGTGGAACACCAAGAGGCAAAGAGAATGCAGTTGCGGCATTGCTTGAGTTGTGCCGGAGTGGAGGAGCCGCTGCAACTGAAAGGGTGGTTAAGGCACCAGCTTTGGCTGGTTTACTTCAAACCCTGCTTTTCACAGGGACAAAGCGAGCAAGACGAAAAGCAGCTTCACTTGCTAGAGTGTTTCAGAGATGTGAGAATGCATCTTTACATTATGGTGGATTAGGTGTAGGGTATGCATTTGCAAGCAATTCAGCTCAAAATAGGGATACAAGCTTTGCGGGTGATGTTTCAGTACCGATGTCCATTTCTGTCCCTGTGTTATAG 1782 0.4658 MASGAIFSSLRRRRSPTLEAFLAPVDLSDVALIQTLVSVANELVSCFSKCPFFQRKNSRSLIRKVENHSISGHFHDLNQEISTLLDVFPVKDIGLSKDVREQVELLQKQSRRAKLFIDMKDDALRIRFFSFLDEFENGRIPDSAELRSFYVENCGFWMLQVVEMKLMLWRSRLLIMRDDELDLENGGGQTYDRSSISRWMEEGHTTCPKTGQMLAHNRLVPNRALRNLIVQWCAAHGVPLDPPEVMDPMGESFASACPTNAALEANRATAALLIQQLANGSQTGKTIAAREIRLLAKTGKENRAFIAEAGAIPHLRNLLSSPNAVAQENSVTALLNLSIFDKNKSRIMDEEGCLGSIVDVLRFGHTTEARENAAATLFSLSAVHDYKKIIADKTGAVEALAGLLQEGTPRGKKDAVTALFNLSTHTENCVRMIEAGAVSALVGALGNEGVAEEAAGALALIVRQPVGAKAVVSEEEAVAGLIGMMRCGTPRGKENAVAALLELCRSGGAAATERVVKAPALAGLLQTLLFTGTKRARRKAASLARVFQRCENASLHYGGLGVGYAFASNSAQNRDTSFAGDVSVPMSISVPVL 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi169g00028 593 Gene3D - 248 391 IPR011989 -
Sebi169g00028 593 SMART Ubox_2 173 232 IPR003613 GO:0004842|GO:0016567
Sebi169g00028 593 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 179 239 IPR013083 -
Sebi169g00028 593 Gene3D - 392 550 IPR011989 -
Sebi169g00028 593 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 395 437 IPR000225 GO:0005515
Sebi169g00028 593 SMART arm_5 299 339 IPR000225 GO:0005515
Sebi169g00028 593 SMART arm_5 384 424 IPR000225 GO:0005515
Sebi169g00028 593 SMART arm_5 425 463 IPR000225 GO:0005515
Sebi169g00028 593 SUPERFAMILY ARM repeat 272 547 IPR016024 -
Sebi169g00028 593 SUPERFAMILY RING/U-box 188 239 - -
Sebi169g00028 593 FunFam RING-type E3 ubiquitin transferase 242 564 - -
Sebi169g00028 593 ProSiteProfiles U-box domain profile. 188 239 IPR003613 GO:0004842|GO:0016567
Sebi169g00028 593 Pfam U-box domain 188 236 IPR003613 GO:0004842|GO:0016567
Sebi169g00028 593 PANTHER U BOX DOMAIN-CONTAINING 56 550 - -
Sebi169g00028 593 Pfam Armadillo/beta-catenin-like repeat 300 338 IPR000225 GO:0005515
Sebi169g00028 593 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 310 352 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi169g00028 Sebi-Chr169 304138 306287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi169g00028 1 66 U-box Gene Family AT1G29340 76.119 5.99e-16 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi169g00028 - - cave:132171625 815.068