Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi169g00024 ATGGGTGGTGTTCTAAGAATTAGAAGAGATTCTGCTGTTAGAGGGGTTGATGTTCTGATCATGACTAGGGCTATCCGCAATAGGGTACTTAAGGATGCCAATGGTGATATCAGTGATCATCTACGCAACCACATCCATTTAACAAATTGCATTCACTTGAAGAACCATATGCACAAGAACAGCCCTATACTGGCTGATAGGTCAATCATGAGGGACCTTGTTGTGCTGCAGAGATCACGCTCTCTCAGGGACCCTTCTGCAAGTCCTCCATCATGGAAGTCACCTTCTGTAGTTGACATACTTTACAAAAAAGCTGAAAATGATGCCATGGCTATGGGGGGAAGAAGGTCTATAGGTGTTGAGCGCAGGAAGGAAGGGAGGAGATTGTCTGGAACCTCACCACCCTTGGTGAATATAGGTGCATCAAGAGTTGCTCCAGGTGAGGTTAGTAGGGGTCATGATGCGGTACCGGCAACTAGTGAACGAAGTAGCAGGAGTGGAATGGGGGATGGGAGGAGAGTTGGGAGAGAAGAATCTGGTAGGAAGAGTGATAGGCCTGATTATTTGGATGTTAGTCAAGGGCAACCCCTAGATCAAGCTGGCAGAAGTTTGGCTGAAGATGTTATTTCAAGGCACTCTGAGTCTAAAGAGAGAAGGAGCAAACAGAGGGGGAAGAATGTTCAAGTTAAGACCCTTTCTGAGCAGCTGAATGATGTTCCATTGGATAGTGATGATTTAGCATCATCAAACATTCATTTTCGAGGAAGGTTTCCAAGACAGGAGAAAATTATTGAGGAGGCAGAAGCTGTCATGCGTGCTCATGGAAGTGGAATGAATAGGGTAAAAAGGCGTAAATTTCGAAGTGCAAGAAGAGCTCGGGTTGCTACAGCATCAAGAGATATTGGTGCTGAGAATGAATTGTCTGTGGCTTCCAACTCATTAGCTCAGGGTTCAGCCCACCAGAAATATCACTCTGAGGAGGTTGATGAATATGCAGATGACAATGTTACTAGGGCTCCAAAAAATGGGTGTGGTATTCCTTGGAATTGGTCCAGAATTCATCACAGAGAGGCACTGCCTTTACTAGTTGATGCGTCTGGATCTCATGGAAGCACTGATAATGCTTGCTGGGGCCATGACTATTCTGGGGAACTAGGTCTTTTTGGTGATCATTTATTCAAGCATGATATTGATTCTGATCTTGCTTCTGAAGCTAGATCTGGTGGCCAACATAAGTTGAGAGGGAATCGTCATGGTAGACACCAAAGCTTAACACAAAAATATATGCCACGGACCTTCAGAGATTTGGTTGGACAGAATTTAGTGGCACAAGCTCTTTCAAATGCAGTAATGAAAAGGAAAGTTGGGTTGTTGTATGTGTTTTATGGTCCCCATGGCACTGGAAAAACTTCCTGTGCTCGCATATTTGCCAGAGCTTTGAATTCACATGATATGGGCAAGAGTAGAAATATAAGGGAAGTTGGTCCAGTCAGTAATTTTGACTTTGAGAGCATCATGGATCTACTTGATAATATGATTGTTTCCCAGCTTCCATCACAATATAGAGTGTTTATTTTTGATGACTGTGATACTCTGTCAGCAGATTGTTGGAATGCTATATCAAAGGTCATTGATCGAGCACCTAGACGTGTGGTTTTTATCCTTGTCAGTTCTAGTCTTGATGTCTTGCCTCATATAATAATATCCAGGTGTCAAAAATTCTTTTTCCCAAAGCTGAAGGATGCAGATATTATATACACACTGCAGTTGATCGCAACCAAAGAAGGTCTAGAAATTGATAAGGATGCTCTGAAACTCATTGCATCAAGATCGGATGGATCATTGAGAGATGCTGAGATGACCCTTGAACAACTTAGTTTGCTTGGGCAGAGAATATCTGTTCCTCTAGTTCAGGAACTGGTAGGGCTCATCTCTGATGAGAAATTGGTGGATCTGCTTGATTTGGCATTATCTGCAGACACAGTTAACACTGTGAAGAATTTGAGAGTAATCATGGAAACTGGTGTTGAGCCATTGGCTTTAATGTCACAACTTGCTACAGTAATTACTGATATACTTGCTGGGACCTATGATTTCACAAAAGAAAGGCGAAGAAGGAGGTTCTTCCGGAGACAACCATTGTCCAAAGAAGACATGGAAAAGCTTCGCCAAGCTCTGAAAACTTTATCTGAGGCTGAAAAGCAGTTGAGGATGTCCAATGACAAGCTAACATGGTTGACTGCTGCATTGCTTCAACTTGCTCCTGACCAGCAATATGTGTTGCCTACTTCATCTGATAATAGTTTCAACCATAGTCCCTTGGCACTAAAAAATGCAGATGTGAGAGAAGCTGCTAGAATCACTGGTAATCCTGTTGAAATTCCTAACAAAGGCAGACGATTGTCAATGGATGCTAGAATAGAAAATTTCCATGCTGGGAGCTCAGCAGATGGTATGACAAAGGGTCATAGTTCAGAGAAAAGAAGACTTAGTGTGTCTGGTTTTCCTCCTCAACATACTTATTCACATGCCACCCATAATAAGATTAGGATAAATGAGAGGCAGATCTTGGGTAAAAACCGTAAAGAAATTGAAGAGATATGGTTAGAGGTGCTTGAGAGAATTCAAGTTACTGGTCTGAAAGAGTTTTTGTATAAAGAAGGCAAGCTGATCTTTGTTAGTTTTGGGGCAGAGTTCATCATAAAGTTAACAGTGCTCCAACTGTGGCAGCTAATGTTTAGTTCTCAACTGGCTAAATCTACTGCTGAGAAGTTCACTGGTCACATCTTACAAGCATTTGAATCTGTCCTGGGATCTTCTATAACCATAGAAATTAGATGTGAGTCAAATAAAGATGCAGGCTCAGCTGCTCAACTGCCTCTTATATTGCCTGCTTTCAATGATGGTTCGTCTCAAATTAGAGACATAAATGGTGTTGGCACTGAAGCTCATCCTTCACTAATTGATTCTGTTGAAAAGAGAAGGGGTGAAATTGTAGAAGAAGCATCTTCTCATGTGGAGCACAAGAATAATGAGCAGCAGGTTGATGCTCATACAGCATCTTATAAAAGTCTAGAAGACAGAAGAAAGCTTAGGGAGCAAGGTCAAAGTCGAAGTCTTGTAAGAAGTAAGGAGATTGGAACCAAGATCAAGGAGCTTACTATGCTGGAAAGCAACAAGAGTAACCCGTCGGAAGCTGTGTAG 3204 0.4213 MGGVLRIRRDSAVRGVDVLIMTRAIRNRVLKDANGDISDHLRNHIHLTNCIHLKNHMHKNSPILADRSIMRDLVVLQRSRSLRDPSASPPSWKSPSVVDILYKKAENDAMAMGGRRSIGVERRKEGRRLSGTSPPLVNIGASRVAPGEVSRGHDAVPATSERSSRSGMGDGRRVGREESGRKSDRPDYLDVSQGQPLDQAGRSLAEDVISRHSESKERRSKQRGKNVQVKTLSEQLNDVPLDSDDLASSNIHFRGRFPRQEKIIEEAEAVMRAHGSGMNRVKRRKFRSARRARVATASRDIGAENELSVASNSLAQGSAHQKYHSEEVDEYADDNVTRAPKNGCGIPWNWSRIHHREALPLLVDASGSHGSTDNACWGHDYSGELGLFGDHLFKHDIDSDLASEARSGGQHKLRGNRHGRHQSLTQKYMPRTFRDLVGQNLVAQALSNAVMKRKVGLLYVFYGPHGTGKTSCARIFARALNSHDMGKSRNIREVGPVSNFDFESIMDLLDNMIVSQLPSQYRVFIFDDCDTLSADCWNAISKVIDRAPRRVVFILVSSSLDVLPHIIISRCQKFFFPKLKDADIIYTLQLIATKEGLEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGTYDFTKERRRRRFFRRQPLSKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPTSSDNSFNHSPLALKNADVREAARITGNPVEIPNKGRRLSMDARIENFHAGSSADGMTKGHSSEKRRLSVSGFPPQHTYSHATHNKIRINERQILGKNRKEIEEIWLEVLERIQVTGLKEFLYKEGKLIFVSFGAEFIIKLTVLQLWQLMFSSQLAKSTAEKFTGHILQAFESVLGSSITIEIRCESNKDAGSAAQLPLILPAFNDGSSQIRDINGVGTEAHPSLIDSVEKRRGEIVEEASSHVEHKNNEQQVDAHTASYKSLEDRRKLREQGQSRSLVRSKEIGTKIKELTMLESNKSNPSEAV 1067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi169g00024 1067 Pfam DNA polymerase III, delta subunit 439 579 - -
Sebi169g00024 1067 CDD HLD_clamp_pol_III_gamma_tau 579 642 IPR045085 -
Sebi169g00024 1067 Pfam DNA polymerase III subunits gamma and tau domain III 635 753 IPR022754 GO:0003887
Sebi169g00024 1067 MobiDBLite consensus disorder prediction 1002 1043 - -
Sebi169g00024 1067 Gene3D - 580 642 - -
Sebi169g00024 1067 MobiDBLite consensus disorder prediction 113 228 - -
Sebi169g00024 1067 Coils Coil 715 742 - -
Sebi169g00024 1067 NCBIfam DNA polymerase III subunit gamma/tau 422 753 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Sebi169g00024 1067 SUPERFAMILY post-AAA+ oligomerization domain-like 650 753 IPR008921 GO:0003677|GO:0006260
Sebi169g00024 1067 MobiDBLite consensus disorder prediction 166 188 - -
Sebi169g00024 1067 MobiDBLite consensus disorder prediction 205 224 - -
Sebi169g00024 1067 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 425 840 - -
Sebi169g00024 1067 Coils Coil 1008 1028 - -
Sebi169g00024 1067 FunFam DNA polymerase III subunit gamma/tau 580 642 - -
Sebi169g00024 1067 Gene3D - 413 579 IPR027417 -
Sebi169g00024 1067 MobiDBLite consensus disorder prediction 1021 1043 - -
Sebi169g00024 1067 SMART AAA_5 455 579 IPR003593 GO:0016887
Sebi169g00024 1067 MobiDBLite consensus disorder prediction 813 837 - -
Sebi169g00024 1067 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 422 641 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi169g00024 Sebi-Chr169 269040 280595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi169g00024 422 703 Core DNA Replication Machinery Family AT1G21690 24.825 3.50e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi169g00024 - - gmx:100809005 1638.62