Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi169g00012 ATGGATCAAGCAGGAATCAAAGGCAGAGGTGAGGTATTGCATCCGGTTCTTGAAGGGGTAGATGGGAATTTAAGTCCTTTGGTTGAAAGGGTTGCAATTGATGCAATAGATAGTAGTAGCTTGGTTGACAGACCTAGTATGATTGGGGAAGTTGGAACTTCAGGAGAGGTGGGTAAGGATTCGGGATCCAATAAGGAGCTAAAGGAGGAGCCTGAGGATGTTAAGGGTCAGGACAAGTGTGATCAAGAAAATATATGTGATAAATTGCCTGGGGTTGATCAAGGAACTAGTTATAATTCAAACAATTTGGTTAATCAGGAAGTGCTTGAGACTGTGGTGGTAATAGAGCCTGTTCAAACTGAATACATCAATGGAGATAACAGGAAATTGGAAGCAAAAGCTAATGAATCAGAGCTGAACTTGGCATCCATGAAAGTGGCAAAAGGGGTGTCTGAAACAGATAAAAATTCATGTGTGATTGATATAAAGTCCAGCAGCTGCAAAGGGTTTTATGAGAATTCAGAAGGTGAAAGGATTTGTAGGATTTGCCATCTGACTTCTGGGCAGTCATCAGATGAAACAGCAGTGGATACTGCTAATAGTGCTACAAGCACAGATTTGATTCAGCTTGGTTGCGCGTGTAAAGATGAGTTGGGCATTGCACACCTTCATTGTGCTGAAGCGTGGTTCAAGGTTAAGGGAAACAGGTTTTGCATTAAAGCTTTCAACATTGATCACATTCCTGATGCTGTCAACTTATTTTGA 765 0.4144 MDQAGIKGRGEVLHPVLEGVDGNLSPLVERVAIDAIDSSSLVDRPSMIGEVGTSGEVGKDSGSNKELKEEPEDVKGQDKCDQENICDKLPGVDQGTSYNSNNLVNQEVLETVVVIEPVQTEYINGDNRKLEAKANESELNLASMKVAKGVSETDKNSCVIDIKSSSCKGFYENSEGERICRICHLTSGQSSDETAVDTANSATSTDLIQLGCACKDELGIAHLHCAEAWFKVKGNRFCIKAFNIDHIPDAVNLF 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi169g00012 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 172 242 IPR013083 -
Sebi169g00012 254 Coils Coil 127 147 - -
Sebi169g00012 254 Pfam RING-variant domain 180 238 IPR011016 GO:0008270
Sebi169g00012 254 SUPERFAMILY RING/U-box 174 238 - -
Sebi169g00012 254 MobiDBLite consensus disorder prediction 61 80 - -
Sebi169g00012 254 SMART ringv_2 179 239 IPR011016 GO:0008270
Sebi169g00012 254 ProSiteProfiles Zinc finger RING-CH-type profile. 172 238 IPR011016 GO:0008270
Sebi169g00012 254 PANTHER ZINC FINGER, RING-CH-TYPE 59 238 - -
Sebi169g00012 254 MobiDBLite consensus disorder prediction 44 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi169g00012 Sebi-Chr169 129108 129944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi169g00012 174 238 C3H Transcription Factor Family AT5G05830 47.692 1.17e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi169g00012 - - gmx:102668208 332.028