Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi169g00008 ATGAAGCCCTTTTGCAGATTGTTGATTCTCTTGGCGCTCGTTGCTCTCGTGGAATCTTCATGCAGCAACAGTACTACTGGTGACCAGGACCTGGTGTCAAAGGCCTTTCAATCTGTCTCTGGATTCAACGCTTCCTGGTTCCAACCAAGAGGTTCCAACTGTTCAAAGGCTGAGATTAGGTCGATAAAGCTTCCGTTTAGAAATTTGAGTGGGAGTATCTCATGGAGGTATCTGAGGAACATGTCCAAGTTGGAGGTTCTCGATCTGTCTGGGAATTATCTGCAAGGCCAGGTGCCAAACTGGTTCTGGGCAAGCTCAAGCTTATTGGAAGTGAATCTGTCCAAGAACCGGTTCGGAGGGAGCATTGCTTTGAAACCCACTTCACAAAATGGTTCCTTTTCGTCACTCCAAACACTCAATCTCTCCCACAACAGGTTCACCAATCTGGTTCAACTCTCTGGTTTTTCAAACCTGAAAAGTCTGGACCTTTCCCACAACAAGCTTGGAACTTTGCCTTCTGGGTTCCAAAATCTCACCAACCTAACCTACCTCGATCTCTCTAGCTGCAACATCAAAGGAAACGTAAAACCCATTTCTTCCATTCGCTCACTCACCCACTTGGATTTGTCAAACAACAGTTTGAATGGCAGTTTCCCTTCTGATTTCCCTCCTCTGAAGAGCATCAAGTTCTTGAACATCTCACACAACAACTTCAAATCCTCTGTTACCTTAGACAGGTTCAAAAAGTTTGGAAAATCAGCATTCATTCACGCCGGAAAGAAGAGGCAATTGGCGAAAAGGAACAAATGGGCAATCTCCAAACCGATGATTCCATTGACCATTAAGATGGAGAAATCTGGGCCGTTCGCGTTCGAGACAGAGTCAGGGACATCATGGGTGGCTGACCTTAAGGAACCGTCTTCAGCACCAGTGGTGATGTTCGAGAAGCCTTTGATGAACCTCACCTTCGTCGACCTCATGGCTGCCACGTCACACTTTGGGAAAGACTCTCAGCTAGCAGAGGGTAGGTGTGGACCCGTCTATCGAGCTGTACTACCTGGAGACATCCACGTGGCAATCAAGGTCCTTGAAAACGCCAGAGACGTTGATCATGATGACGCTGTCTCTACCTTCGTTGACCTCTCCCACCTCAAGCACCCCAATCTCTTACCTCTTTCCGGTTACTGCATCGCAGGTGGCTGCATGAGCTACCGACGGGGGAGACTAACGTGGAGGATTGGAGTGGTGACACGTGGGAGATTCAAAACGGCGTCGGTTCGCGAGCATCCTCTCCTGAAAAGATGGGGTGGCCAACACGACACCGTATCGCGGTTGGGGGTAGCGCGTGGGCTAGCTTTCCTCCACCACGCGGGTTCGAAGCCCGTCGTCCACGGCCACCTGGTGACACCAAACGTCCTTCTCGCCGATGACTTCGAGCCTCGAATCGCTGATTTCGGGTTCCGGAAGTTCGGGCAGCAACAAGGCCCCCTTAATTGCAGCACCGAAACGGACGTGTATTGCTTCGGGGTGGTGCTGATGGAGCTTCTGACGGGGAAGCCCGGCACGGCCGAGACGGTGGTTTGGGTGCGGAAACTGGTTAGGGAGGGGCACGGGGTGAGGGCACTTGATGAGAGGCTCAGACTCGGTGGCGCTGACTCGGAAAGTGAGATGGTGGAGAGCCTCCGAGTCGCGTATCTCTGTACGGCCGAGTCACCGGGGAAGAGGCCCACCATGCAACAGGTGTTGGGCCTTCTCAAAGACATTCATCCTAGCCGCGGGCTTGACTGA 1788 0.5185 MKPFCRLLILLALVALVESSCSNSTTGDQDLVSKAFQSVSGFNASWFQPRGSNCSKAEIRSIKLPFRNLSGSISWRYLRNMSKLEVLDLSGNYLQGQVPNWFWASSSLLEVNLSKNRFGGSIALKPTSQNGSFSSLQTLNLSHNRFTNLVQLSGFSNLKSLDLSHNKLGTLPSGFQNLTNLTYLDLSSCNIKGNVKPISSIRSLTHLDLSNNSLNGSFPSDFPPLKSIKFLNISHNNFKSSVTLDRFKKFGKSAFIHAGKKRQLAKRNKWAISKPMIPLTIKMEKSGPFAFETESGTSWVADLKEPSSAPVVMFEKPLMNLTFVDLMAATSHFGKDSQLAEGRCGPVYRAVLPGDIHVAIKVLENARDVDHDDAVSTFVDLSHLKHPNLLPLSGYCIAGGCMSYRRGRLTWRIGVVTRGRFKTASVREHPLLKRWGGQHDTVSRLGVARGLAFLHHAGSKPVVHGHLVTPNVLLADDFEPRIADFGFRKFGQQQGPLNCSTETDVYCFGVVLMELLTGKPGTAETVVWVRKLVREGHGVRALDERLRLGGADSESEMVESLRVAYLCTAESPGKRPTMQQVLGLLKDIHPSRGLD 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi169g00008 595 Gene3D Phosphorylase Kinase; domain 1 293 403 - -
Sebi169g00008 595 ProSiteProfiles Leucine-rich repeat profile. 135 156 IPR001611 GO:0005515
Sebi169g00008 595 Gene3D Ribonuclease Inhibitor 21 127 IPR032675 -
Sebi169g00008 595 ProSiteProfiles Protein kinase domain profile. 333 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi169g00008 595 Gene3D Transferase(Phosphotransferase) domain 1 443 593 - -
Sebi169g00008 595 Pfam Leucine rich repeat 68 118 IPR001611 GO:0005515
Sebi169g00008 595 Pfam Leucine rich repeat 201 238 IPR001611 GO:0005515
Sebi169g00008 595 Pfam Leucine rich repeat 135 191 IPR001611 GO:0005515
Sebi169g00008 595 PRINTS Leucine-rich repeat signature 158 171 - -
Sebi169g00008 595 PRINTS Leucine-rich repeat signature 201 214 - -
Sebi169g00008 595 Pfam Protein tyrosine and serine/threonine kinase 336 489 IPR001245 GO:0004672|GO:0006468
Sebi169g00008 595 FunFam Calmodulin-binding receptor kinase CaMRLK 134 244 - -
Sebi169g00008 595 Gene3D Ribonuclease Inhibitor 128 260 IPR032675 -
Sebi169g00008 595 SUPERFAMILY Protein kinase-like (PK-like) 310 585 IPR011009 -
Sebi169g00008 595 ProSiteProfiles Leucine-rich repeat profile. 157 179 IPR001611 GO:0005515
Sebi169g00008 595 SUPERFAMILY L domain-like 57 242 - -
Sebi169g00008 595 PANTHER OS05G0588300 PROTEIN 10 168 - -
Sebi169g00008 595 FunFam Putative LRR receptor-like serine/threonine-protein kinase 294 402 - -
Sebi169g00008 595 SMART LRR_typ_2 201 224 IPR003591 -
Sebi169g00008 595 SMART LRR_typ_2 155 177 IPR003591 -
Sebi169g00008 595 SMART LRR_typ_2 81 104 IPR003591 -
Sebi169g00008 595 SMART LRR_typ_2 133 154 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi169g00008 Sebi-Chr169 70545 73086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi169g00008 62 588 Receptor kinase-like Gene Family AT5G07280 29.285 5.71e-59 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Sebi169g00008 PK_Tyr_Ser-Thr 1e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi169g00008 - - gmx:100809704 714.916