Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi169g00004 ATGAGATGGAACACATTTAGATTTTGGTTTAGAATTTATATTTGCTTGATATCTGTGTGGGGAATCCAAGAGTGTTGGTCGCTTAATGATGAAGGATTGGCTCTGTTGGAGTTCCGGGCAAAAATAACTTCTGATCCTTATGTTGCCTTGGCAAATTGGAATCCAAATGATTGTGACCCTTGCAAATGGTCAGGTGTTCATTGTGTCGATGGTAAAGTGCAAATGCTGGACCTAAACGGGCTATCTTTGGAAGGGACATTGGCTCCTGAGCTTGGGAAACTTGCTCACTTAAAATCTCTTGTGTTAAGCAAGAACAACTTTTCTGGCACCATTCCCAAAGAACTTGGAGATCTAGGCAAGCTGGAATTGTTGGATTTAAGGGAGAATAATTTGTCAGGAAGCATCCCAGCAGAAATTACCAGGATGTTATCGCTAAAACACTTGTTGCTTTGTGACAATAAAATTGAAGGTAGTGATTCTCAAGATCAAGGAAAATTCAGATTACTTGTTGCCGATTGTTCTCTAACAACCTTTTTTGCTTGCATCAATAGAAAGTTTGGACATTGGTTCAAGAATGACCATGAAGGGAAATTCTGCCATGTTCTACCAAGTTCTAATGAGCTAGAGATTATCCAAAATGCACCAAATCTTGTCAATTCTGCACGTCGTAAGTTACTTGATCAGACAAGTAACATGGCAGCTGCACCTTATAGTGGTGGACCTACTATAGAGTTCAGTTCTGTTCCAATTACAGTGAGTAGTGGATCTTTCCCAGCTGTGCCAGATGCCAATAAGAAACAGAATCAGTCACCTGCACCACTGCCTTCACCTCCTGATCCTCCACATGGTGCTTCTGATGGAAATCAAACAAGTCAACAACATTCTGCTAATGGAAGTGGTGCTTCTAGAAAGTTGTGGAAGTACATAATTATTAGTATAGCTGTGGTTGTGTTGGTCATTGTTATCATAATTCTTCTTTGCATTTGGCGAAAACGAGCAGCAAAAATAATAAGCCCATGGAAGACAGGAATAAGTGGACAGTTGCAGAAAGCATTTATAACAGGGGTGCCCAACTTGAATAGAGCAGAACTAGAGACAGCCTGTGAGGATTTCAGCAATATTGTTATTAATTTTGATGCATGCACCATATACAAAGGAACACTGTCCAGTGGGGTTGAGATTGCTGTTGTTTCTACTCTGATTACTTCTTCCCAAGATTGGTCTAAGAGCATGGAGATGAACTACCGGAAAAAGATTGATACTTTGTCCCGCATAAACCATAAGAACTTCATTAATCTTATTGGGTATTGTGAAGAAGAAGAACCATTCACAAGGATGTTGGTGTTTGAGTATGCTCCAAATGGAAGTCTATTTGAGCATTTGCATGTTAAGGAAGTTGAACGTCTTGATTGGAGTGAAAGGGTGAGGATTATAATGGGCACTGCTTATTGTCTTCAGTACATGCACCTTGATCTGAATCCACCCATAGCTCATAGCAAGCTTACTTCAAGTATGATATTATTAACAGATGATTTTGCCGCTAAGATTGCAGAGATCACTTTTGGAAACGTTGTATCAGCAGCTAAGACAAGTGGAGGTGATTCAAAGAAATCTGAGTCACCAACCCGTGATGACCTTGCAAACAATGTCTATGACTTTGGAATATTGCTGCTTGAAATCATTTCTGGGAAATTGCCTTGTTCTGAAGAAGAAGGCAATCTTGTGAATTGGGCTGCTGAGTACTTAAATGACAAGAAAAGCATCAGCTATATGATTGATCCATCCCTTAAGTCTTTCAAGGATAATGAACTTGATGTCATCTGTGAGGTGATCAAAGATTGTATCCAACCTGAAACAAAGTTAAGACCCACAATGAGGGACATAACTTCCAAATTGAGGGAAGTGATTAGTGTGTCACCTGAGCAAGCGGTCCCAAGACTTTCTCCACTCTGGTGGGCTGAATTGGAGATCTTGTCAGTGGAGGCCACTTAA 1992 0.4031 MRWNTFRFWFRIYICLISVWGIQECWSLNDEGLALLEFRAKITSDPYVALANWNPNDCDPCKWSGVHCVDGKVQMLDLNGLSLEGTLAPELGKLAHLKSLVLSKNNFSGTIPKELGDLGKLELLDLRENNLSGSIPAEITRMLSLKHLLLCDNKIEGSDSQDQGKFRLLVADCSLTTFFACINRKFGHWFKNDHEGKFCHVLPSSNELEIIQNAPNLVNSARRKLLDQTSNMAAAPYSGGPTIEFSSVPITVSSGSFPAVPDANKKQNQSPAPLPSPPDPPHGASDGNQTSQQHSANGSGASRKLWKYIIISIAVVVLVIVIIILLCIWRKRAAKIISPWKTGISGQLQKAFITGVPNLNRAELETACEDFSNIVINFDACTIYKGTLSSGVEIAVVSTLITSSQDWSKSMEMNYRKKIDTLSRINHKNFINLIGYCEEEEPFTRMLVFEYAPNGSLFEHLHVKEVERLDWSERVRIIMGTAYCLQYMHLDLNPPIAHSKLTSSMILLTDDFAAKIAEITFGNVVSAAKTSGGDSKKSESPTRDDLANNVYDFGILLLEIISGKLPCSEEEGNLVNWAAEYLNDKKSISYMIDPSLKSFKDNELDVICEVIKDCIQPETKLRPTMRDITSKLREVISVSPEQAVPRLSPLWWAELEILSVEAT 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi169g00004 663 Pfam Leucine rich repeat 96 155 IPR001611 GO:0005515
Sebi169g00004 663 Gene3D Transferase(Phosphotransferase) domain 1 452 644 - -
Sebi169g00004 663 MobiDBLite consensus disorder prediction 259 298 - -
Sebi169g00004 663 SUPERFAMILY Protein kinase-like (PK-like) 382 632 IPR011009 -
Sebi169g00004 663 MobiDBLite consensus disorder prediction 283 298 - -
Sebi169g00004 663 ProSiteProfiles Protein kinase domain profile. 334 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi169g00004 663 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 28 175 - -
Sebi169g00004 663 Pfam Protein tyrosine and serine/threonine kinase 383 632 IPR001245 GO:0004672|GO:0006468
Sebi169g00004 663 Gene3D Ribonuclease Inhibitor 27 214 IPR032675 -
Sebi169g00004 663 SUPERFAMILY L domain-like 26 167 - -
Sebi169g00004 663 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Sebi169g00004 663 FunFam Inactive receptor-like serine/threonine-protein kinase 343 451 - -
Sebi169g00004 663 PANTHER PROTEIN MALE DISCOVERER 2 11 661 - -
Sebi169g00004 663 Gene3D Phosphorylase Kinase; domain 1 342 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi169g00004 Sebi-Chr169 23456 27619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi169g00004 12 635 Receptor kinase-like Gene Family AT2G42290 25.802 1.10e-49 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Sebi169g00004 PK_Tyr_Ser-Thr 1.9e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi169g00004 - - adu:107468254 886.33