Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi168g00107 ATGAAAGAAGGGGGTGGAAGGAAGCAGGGTGCAACCTCACCCTGTGCTGCATGCAAGCTTCTGAGGAGAAGGTGTGCTCAAGATTGTGTTTTTGCTCCCTATTTCCCTGCTGATGAGCCCCAGAAGTTTGCAAATGTGCACAAGGTTTTTGGTGCTAGCAATGTTAACAAAATGCTTCAGGACCTACCAATGCATCAACGAGGGGATGCAGTGAGTAGCATGGTGTATGAGGCCAATGCCAGAGTCCGAGACCCTGTGTATGGGTGTGTTGGGGCCATTTCTTCTCTTCAGCAACAGATTGATGTGTTACAGACCCAATTGGCCCTGGCCCAAGCTGAGGTGGTACACCTTCGGGTGCGCCAAAATAGAGGTTTTTCCAATCATGGGCTTAGATCCAATAGCCCAACAAGTAGTGGGTCCCCATCATCTAAGATCATGAACTCACAAGCTAAGCCTATTTTTGACATGGAAATTGGGGTGGACCAGGCCAGTTATGGTGGTTCAATGTGGTAA 513 0.4873 MKEGGGRKQGATSPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQDLPMHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLALAQAEVVHLRVRQNRGFSNHGLRSNSPTSSGSPSSKIMNSQAKPIFDMEIGVDQASYGGSMW 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi168g00107 170 Coils Coil 93 113 - -
Sebi168g00107 170 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 137 - -
Sebi168g00107 170 Pfam Lateral organ boundaries (LOB) domain 14 111 IPR004883 -
Sebi168g00107 170 MobiDBLite consensus disorder prediction 125 146 - -
Sebi168g00107 170 ProSiteProfiles LOB domain profile. 13 114 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi168g00107 Sebi-Chr168 1530558 1533570 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi168g00107 1 170 AS2 family AT1G31320 80.117 2.33e-79 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Sebi168g00107 LOB 1.7e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi168g00107 - - gmx:100794219 308.916